Mir-9-P10

MirGeneDB ID

Dsi-Mir-9-P10

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-9a

Paralogues

Dsi-Mir-9-P9 Dsi-Mir-9-P11 Dsi-Mir-9-P12-v1 Dsi-Mir-9-P12-v2 Dsi-Mir-9-P13

Orthologues

Aae-Mir-9-P10a Aae-Mir-9-P10b Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P10 Dme-Mir-9-P10 Dmo-Mir-9-P10 Dya-Mir-9-P10 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Tca-Mir-9-o10-v1 Tca-Mir-9-o10-v2 Xbo-Mir-9

Node of Origin (locus)

Diptera

Node of Origin (family)

Bilateria

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

3L: 19107021-19107081 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AACCGGCUCUAUAUACAGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUAAAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGACCAGCGAAACAGCCAA

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Structure

        10         20         30        40        50          
AACCGGCUCUAUAUACA-  GU   -|     U       UAU      G     GUGAUA 
                  GG  GCU AUGUUG CUUUGGU   CUAGCU UAUGA      \
                  UC  CGA UAUAAU GAAGCCA   GAUCGA AUACU      A
AACCGACAAAGCGACCAG  UG   U^     U       UUC      A     GCAAUA 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

He	Wh

Mature sequence

Dsi-Mir-9-P10_5p

mirBase accession

MIMAT0008843

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

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Star sequence

Dsi-Mir-9-P10_3p*

mirBase accession

None

Sequence

38- AUAAAGCUAGCUUACCGAAGUUA -61

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