MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-9

Family name

MIR-9 (all species)

Seed

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-9-P10a Aae-Mir-9-P10b Aae-Mir-9-P11 Aae-Mir-9-P12-v1 Aae-Mir-9-P12-v2 Aae-Mir-9-P13 Aca-Mir-9-P1 Aca-Mir-9-P2 Aca-Mir-9-P4 Aga-Mir-9-P10 Aga-Mir-9-P11 Aga-Mir-9-P12 Aga-Mir-9-P13 Agr-Mir-9 Ami-Mir-9-P1 Ami-Mir-9-P2 Ami-Mir-9-P3 Ami-Mir-9-P4 Asu-Mir-9-o17 Asu-Mir-9-o18 Ava-Mir-9-P33 Ava-Mir-9-P34 Bfl-Mir-9 Bge-Mir-9-P10 Bge-Mir-9-P11 Bge-Mir-9-P12-v1 Bge-Mir-9-P12-v2 Bge-Mir-9-P13 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P1 Bta-Mir-9-P2 Bta-Mir-9-P3 Cbr-Mir-9-P14 Cbr-Mir-9-P15 Cbr-Mir-9-P16 Cel-Mir-9-P14 Cel-Mir-9-P15 Cel-Mir-9-P16 Cfa-Mir-9-P1 Cfa-Mir-9-P2 Cfa-Mir-9-P3 Cin-Mir-9 Cja-Mir-9-P1 Cja-Mir-9-P2 Cja-Mir-9-P3 Cli-Mir-9-P2 Cli-Mir-9-P3 Cli-Mir-9-P4 Cmi-Mir-9-P1 Cmi-Mir-9-P2 Cmi-Mir-9-P4 Cpi-Mir-9-P1 Cpi-Mir-9-P2 Cpi-Mir-9-P3 Cpi-Mir-9-P4 Cpo-Mir-9-P1 Cpo-Mir-9-P2 Cpo-Mir-9-P3 Csc-Mir-9-P26 Csc-Mir-9-P27 Cte-Mir-9 Dan-Mir-9-P9 Dan-Mir-9-P10 Dan-Mir-9-P11 Dan-Mir-9-P12-v1 Dan-Mir-9-P12-v2 Dan-Mir-9-P13 Dgr-Mir-9 Dlo-Mir-9-P9 Dlo-Mir-9-P10 Dlo-Mir-9-P12-v1 Dlo-Mir-9-P12-v2 Dlo-Mir-9-P13 Dma-Mir-9-P9 Dma-Mir-9-P10 Dme-Mir-9-P9 Dme-Mir-9-P10 Dme-Mir-9-P11 Dme-Mir-9-P12-v1 Dme-Mir-9-P12-v2 Dme-Mir-9-P13 Dmo-Mir-9-P9 Dmo-Mir-9-P10 Dmo-Mir-9-P11 Dmo-Mir-9-P12-v1 Dmo-Mir-9-P12-v2 Dmo-Mir-9-P13 Dno-Mir-9-P1 Dno-Mir-9-P2 Dno-Mir-9-P3 Dpu-Mir-9-P9 Dpu-Mir-9-P10 Dre-Mir-9-P1a Dre-Mir-9-P1b Dre-Mir-9-P2a Dre-Mir-9-P2b Dre-Mir-9-P3a Dre-Mir-9-P4a Dre-Mir-9-P4b Dsi-Mir-9-P9 Dsi-Mir-9-P10 Dsi-Mir-9-P11 Dsi-Mir-9-P12-v1 Dsi-Mir-9-P12-v2 Dsi-Mir-9-P13 Dya-Mir-9-P9 Dya-Mir-9-P10 Dya-Mir-9-P11 Dya-Mir-9-P12-v1 Dya-Mir-9-P12-v2 Dya-Mir-9-P13 Eba-Mir-9 Ebu-Mir-9-P5 Ebu-Mir-9-P6 Ebu-Mir-9-P7 Ebu-Mir-9-P8 Eca-Mir-9-P1 Eca-Mir-9-P2 Eca-Mir-9-P3 Efe-Mir-9-P20 Efe-Mir-9-P21 Egr-Mir-9 Esc-Mir-9 Ete-Mir-9-P1 Ete-Mir-9-P2 Ete-Mir-9-P3 Gga-Mir-9-P1 Gga-Mir-9-P2 Gga-Mir-9-P3 Gga-Mir-9-P4 Gja-Mir-9-P1 Gja-Mir-9-P2 Gja-Mir-9-P3 Gja-Mir-9-P4 Gmo-Mir-9-P1a Gmo-Mir-9-P1b Gmo-Mir-9-P2b Gmo-Mir-9-P3a Gmo-Mir-9-P3b Gmo-Mir-9-P4a Gmo-Mir-9-P4b Gpa-Mir-9-P10 Gpa-Mir-9-P11 Gpa-Mir-9-P12-v1 Gpa-Mir-9-P12-v2 Gpa-Mir-9-P13 Gsa-Mir-9 Gsp-Mir-9 Hme-Mir-9-P9 Hme-Mir-9-P10 Hme-Mir-9-P11 Hme-Mir-9-P12 Hmi-Mir-9 Hru-Mir-9 Hsa-Mir-9-P1 Hsa-Mir-9-P2 Hsa-Mir-9-P3 Isc-Mir-9 Laf-Mir-9-P1 Laf-Mir-9-P2 Laf-Mir-9-P3 Lan-Mir-9 Lch-Mir-9-P1 Lch-Mir-9-P2 Lch-Mir-9-P3 Lch-Mir-9-P4 Lgi-Mir-9 Llo-Mir-9 Loc-Mir-9-P1 Loc-Mir-9-P2 Loc-Mir-9-P3 Lpo-Mir-9-P22 Lpo-Mir-9-P23 Lpo-Mir-9-P24 Lpo-Mir-9-P25 Mal-Mir-9-P1a Mal-Mir-9-P1b Mal-Mir-9-P2b Mal-Mir-9-P3a Mal-Mir-9-P3b Mal-Mir-9-P4a Mal-Mir-9-P4b Mdo-Mir-9-P1 Mdo-Mir-9-P2 Mdo-Mir-9-P3 Mdo-Mir-9-P4 Mgi-Mir-9-P17 Mgi-Mir-9-P18 Mgi-Mir-9-P19 Mml-Mir-9-P1 Mml-Mir-9-P2 Mml-Mir-9-P3 Mmr-Mir-9-P1 Mmr-Mir-9-P2 Mmr-Mir-9-P3 Mmu-Mir-9-P1 Mmu-Mir-9-P2 Mmu-Mir-9-P3 Mom-Mir-9 Mun-Mir-9-P1 Mun-Mir-9-P2 Mun-Mir-9-P3 Mun-Mir-9-P4 Neu-Mir-9-P2 Neu-Mir-9-P3 Neu-Mir-9-P4 Npo-Mir-9 Oan-Mir-9-P1 Oan-Mir-9-P2 Oan-Mir-9-P3-v1 Oan-Mir-9-P3-v2 Oan-Mir-9-P4 Obi-Mir-9 Ocu-Mir-9-P1 Ocu-Mir-9-P2 Ocu-Mir-9-P3 Ofu-Mir-9 Ovu-Mir-9 Pab-Mir-9-P1 Pab-Mir-9-P2 Pab-Mir-9-P3 Pau-Mir-9 Pbv-Mir-9-P1 Pbv-Mir-9-P2 Pbv-Mir-9-P3 Pbv-Mir-9-P4 Pca-Mir-9-P31 Pca-Mir-9-P32 Pcr-Mir-9-P37 Pcr-Mir-9-P38 Pdu-Mir-9 Pfl-Mir-9-v1 Pfl-Mir-9-v2 Pma-Mir-9-o1 Pma-Mir-9-o2 Pma-Mir-9-o3 Pma-Mir-9-o4 Pma-Mir-9-o5 Pmi-Mir-9 Pve-Mir-9 Rno-Mir-9-P1 Rno-Mir-9-P2 Rno-Mir-9-P3 Sha-Mir-9-P1 Sha-Mir-9-P2 Sha-Mir-9-P3 Sha-Mir-9-P4 Sko-Mir-9-v1 Sko-Mir-9-v2 Sma-Mir-9 Sme-Mir-9-P28 Sme-Mir-9-P29 Sme-Mir-9-P30 Snu-Mir-9 Spt-Mir-9-P1 Spt-Mir-9-P2 Spt-Mir-9-P3 Spt-Mir-9-P4 Spu-Mir-9 Sro-Mir-9-P35a Sro-Mir-9-P35b Sro-Mir-9-P36 Sto-Mir-9-P1 Sto-Mir-9-P2 Sto-Mir-9-P4 Tca-Mir-9-P9a Tca-Mir-9-P9b-v1 Tca-Mir-9-P9b-v2 Tca-Mir-9-P9c-v1 Tca-Mir-9-P9c-v2 Tca-Mir-9-P10 Tca-Mir-9-P12 Tgu-Mir-9-P1 Tgu-Mir-9-P2 Tgu-Mir-9-P3 Tgu-Mir-9-P4 Tni-Mir-9-P1a Tni-Mir-9-P1b Tni-Mir-9-P2b Tni-Mir-9-P3a Tni-Mir-9-P3b Tni-Mir-9-P4a Tni-Mir-9-P4b Tur-Mir-9-P39a Tur-Mir-9-P39b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P1c Xla-Mir-9-P1d Xla-Mir-9-P2c Xla-Mir-9-P2d Xla-Mir-9-P3c Xla-Mir-9-P3d Xla-Mir-9-P4c Xla-Mir-9-P4d Xtr-Mir-9-P1 Xtr-Mir-9-P2 Xtr-Mir-9-P3 Xtr-Mir-9-P4

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Ruditapes_GCA_009026015)

CM018526.1: 11142109-11142170 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGGGGCAUGCUGUAGAAGACUCUGGUUCUGUCUUUGGUUAUCUAGCUGUAUGAUUGACAUUUACCGCUCAUAAAGCUAGGUUACCAAAGGCAGAAAUAGAUGUCAGAACUACCUACAACAAA

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Structure

        10         20         30        40        50        60
UGGGGCAUGCUGUAGAA-   -|   G             U        G     UUGACA 
                  GAC UCUG UUCUGUCUUUGGU AUCUAGCU UAUGA      U
                  CUG AGAU AAGACGGAAACCA UGGAUCGA AUACU      U
AAACAACAUCCAUCAAGA   U^   A             U        A     CGCCAU 
120       110       100        90        80        70

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Mature sequence

Rph-Mir-9_5p

mirBase accession

None

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

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Star sequence

Rph-Mir-9_3p*

mirBase accession

None

Sequence

39- AUAAAGCUAGGUUACCAAAGGCA -62

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