MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-9-P3

Family name MIR-9 (all species)
Seed CUUUGGU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-9-P1  Cja-Mir-9-P2 
Orthologues Agr-Mir-9  Ami-Mir-9-P3  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cli-Mir-9-P3  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P3  Dre-Mir-9-P3a  Eba-Mir-9  Eca-Mir-9-P3  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P3  Gga-Mir-9-P3  Gja-Mir-9-P3  Gmo-Mir-9-P3a  Gmo-Mir-9-P3b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P3  Isc-Mir-9  Laf-Mir-9-P3  Lan-Mir-9  Lch-Mir-9-P3  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P3  Mal-Mir-9-P3a  Mal-Mir-9-P3b  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mmr-Mir-9-P3  Mmu-Mir-9-P3  Mom-Mir-9  Mun-Mir-9-P3  Neu-Mir-9-P3  Npo-Mir-9  Oan-Mir-9-P3-v1  Oan-Mir-9-P3-v2  Obi-Mir-9  Ocu-Mir-9-P3  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P3  Pau-Mir-9  Pbv-Mir-9-P3  Pdu-Mir-9  Pma-Mir-9-o3  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P3  Rph-Mir-9  Sha-Mir-9-P3  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P3  Spu-Mir-9  Tgu-Mir-9-P3  Tni-Mir-9-P3a  Tni-Mir-9-P3b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xtr-Mir-9-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021932.1: 10382283-10382344 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGGCAGCCAGGAGGCGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGUGUGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUACACUGCGCAGAGGGGC
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Structure
        10           20        30        40        50        60
ACGGCAGCCAGGAGGCG---|     GUUG   UC               G     GUGGUG 
                    GGGUUG    UUA  UUUGGUUAUCUAGCU UAUGA      U
                    CCCAAU    AAU  AAGCCAAUAGAUCGA AUACU      G
CGGGGAGACGCGUCACAUAC^     AAA-   GA               A     UCUGAG 
120       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Cja-Mir-9-P3_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Cja-Mir-9-P3_3p* (predicted)
mirBase accessionNone
Sequence 
39- AUAAAGCUAGAUAACCGAAAGUA -62
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