MirGeneDB ID | Tni-Mir-9-P3a |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-9-P1a
Tni-Mir-9-P1b
Tni-Mir-9-P2b
Tni-Mir-9-P3b
Tni-Mir-9-P4a
Tni-Mir-9-P4b
|
Orthologues |
Agr-Mir-9
Ami-Mir-9-P3
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P3
Cfa-Mir-9-P3
Cin-Mir-9
Cja-Mir-9-P3
Cli-Mir-9-P3
Cpi-Mir-9-P3
Cpo-Mir-9-P3
Cte-Mir-9
Dgr-Mir-9
Dno-Mir-9-P3
Dre-Mir-9-P3a
Eba-Mir-9
Eca-Mir-9-P3
Egr-Mir-9
Esc-Mir-9
Ete-Mir-9-P3
Gga-Mir-9-P3
Gja-Mir-9-P3
Gmo-Mir-9-P3a
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Hsa-Mir-9-P3
Isc-Mir-9
Laf-Mir-9-P3
Lan-Mir-9
Lch-Mir-9-P3
Lgi-Mir-9
Llo-Mir-9
Loc-Mir-9-P3
Mal-Mir-9-P3a
Mdo-Mir-9-P3
Mml-Mir-9-P3
Mmr-Mir-9-P3
Mmu-Mir-9-P3
Mom-Mir-9
Mun-Mir-9-P3
Neu-Mir-9-P3
Npo-Mir-9
Oan-Mir-9-P3-v1
Oan-Mir-9-P3-v2
Obi-Mir-9
Ocu-Mir-9-P3
Ofu-Mir-9
Ovu-Mir-9
Pab-Mir-9-P3
Pau-Mir-9
Pbv-Mir-9-P3
Pdu-Mir-9
Pma-Mir-9-o3
Pmi-Mir-9
Pve-Mir-9
Rno-Mir-9-P3
Rph-Mir-9
Sha-Mir-9-P3
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P3
Spu-Mir-9
Tgu-Mir-9-P3
War-Mir-9
Xbo-Mir-9
Xtr-Mir-9-P3
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
Un_random: 34480108-34480169 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGAUGGGUAGCCUUCGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGAUGUACAUUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAAUCCCAUUACGCUCCUGGAAAGGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGGAUGGGUAGCCUUCG--| UUGG UC G GUGAUG
GGG UUGUUA UUUGGUUAUCUAGCU UAUGA U
CCC AACAAU AAGCCAAUAGAUCGA AUACU A
CGGAAAGGUCCUCGCAUUA^ UAAG GA A UCUUAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on the 3p arm. |
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Tni-Mir-9-P3a_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Tni-Mir-9-P3a_3p* |
mirBase accession | None |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|