Mir-9-P3

MirGeneDB ID

Xtr-Mir-9-P3

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-9a-1

Paralogues

Xtr-Mir-9-P1 Xtr-Mir-9-P2 Xtr-Mir-9-P4

Orthologues

Agr-Mir-9 Ami-Mir-9-P3 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P3 Cfa-Mir-9-P3 Cin-Mir-9 Cja-Mir-9-P3 Cli-Mir-9-P3 Cpi-Mir-9-P3 Cpo-Mir-9-P3 Cte-Mir-9 Dgr-Mir-9 Dno-Mir-9-P3 Dre-Mir-9-P3a Eba-Mir-9 Eca-Mir-9-P3 Egr-Mir-9 Esc-Mir-9 Ete-Mir-9-P3 Gga-Mir-9-P3 Gja-Mir-9-P3 Gmo-Mir-9-P3a Gmo-Mir-9-P3b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Hsa-Mir-9-P3 Isc-Mir-9 Laf-Mir-9-P3 Lan-Mir-9 Lch-Mir-9-P3 Lgi-Mir-9 Llo-Mir-9 Loc-Mir-9-P3 Mal-Mir-9-P3a Mal-Mir-9-P3b Mdo-Mir-9-P3 Mml-Mir-9-P3 Mmr-Mir-9-P3 Mmu-Mir-9-P3 Mom-Mir-9 Mun-Mir-9-P3 Neu-Mir-9-P3 Npo-Mir-9 Oan-Mir-9-P3-v1 Oan-Mir-9-P3-v2 Obi-Mir-9 Ocu-Mir-9-P3 Ofu-Mir-9 Ovu-Mir-9 Pab-Mir-9-P3 Pau-Mir-9 Pbv-Mir-9-P3 Pdu-Mir-9 Pma-Mir-9-o3 Pmi-Mir-9 Pve-Mir-9 Rno-Mir-9-P3 Rph-Mir-9 Sha-Mir-9-P3 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P3 Spu-Mir-9 Tgu-Mir-9-P3 Tni-Mir-9-P3a Tni-Mir-9-P3b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P3c Xla-Mir-9-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr8: 111349809-111349870 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUGGUGGGAUGAACAGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUGUCAAUCCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUUACACUCCUUGGCGCUG

Get precursor sequence

Structure

        10           20        30        40        50        60
GGUGGUGGGAUGAACAG---|     GUUG   UC               G     GUGUUG 
                    GGGUUG    UUA  UUUGGUUAUCUAGCU UAUGA      U
                    CCCAAU    AAU  AAGCCAAUAGAUCGA AUACU      C
GUCGCGGUUCCUCACAUUAC^     AAA-   GA               A     UCCUAA 
120       110       100         90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-9-P3_5p

mirBase accession

MIMAT0003553

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-9a-5p

Star sequence

Xtr-Mir-9-P3_3p*

mirBase accession

MIMAT0003554

Sequence

39- AUAAAGCUAGAUAACCGAAAGUA -62

Get sequence

Proposed targets

TargetScanVert: xtr-miR-9a-3p