MirGeneDB ID | Lch-Mir-9-P3 |
---|---|
Family name | MIR-9 (all species) |
Seed | CUUUGGU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-9-P1 Lch-Mir-9-P2 Lch-Mir-9-P4 |
Orthologues | Ami-Mir-9-P3 Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P3 Cfa-Mir-9-P3 Cin-Mir-9 Cli-Mir-9-P3 Cpi-Mir-9-P3 Cpo-Mir-9-P3 Cte-Mir-9 Dno-Mir-9-P3 Dre-Mir-9-P3a Esc-Mir-9 Ete-Mir-9-P3 Gga-Mir-9-P3 Gja-Mir-9-P3 Gmo-Mir-9-P3a Gmo-Mir-9-P3b Hme-Mir-9-o3 Hsa-Mir-9-P3 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Loc-Mir-9-P3 Mal-Mir-9-P3a Mal-Mir-9-P3b Mdo-Mir-9-P3 Mml-Mir-9-P3 Mmu-Mir-9-P3 Mun-Mir-9-P3 Npo-Mir-9 Oan-Mir-9-P3-v1 Oan-Mir-9-P3-v2 Obi-Mir-9 Ocu-Mir-9-P3 Ovu-Mir-9 Pbv-Mir-9-P3 Pma-Mir-9-o3 Pmi-Mir-9 Rno-Mir-9-P3 Sha-Mir-9-P3 Spt-Mir-9-P3 Spu-Mir-9 Tgu-Mir-9-P3 Tni-Mir-9-P3a Tni-Mir-9-P3b Xbo-Mir-9 Xla-Mir-9-P3c Xla-Mir-9-P3d Xtr-Mir-9-P3 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH127275.1: 176116-176177 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | GUUGCUGAGGGGAUCAGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUGUCAAUUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCCUUUACACUCCUGGAAGAGGet precursor sequence |
Structure | 10 20 30 40 50 60 GUUGCUGAGGGGAUCAG---| GUUG UC G GUGUUG GGGUUG UUA UUUGGUUAUCUAGCU UAUGA U CCCAAU AAU AAGCCAAUAGAUCGA AUACU C GAGAAGGUCCUCACAUUUCC^ AAA- GA A UCUUAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Mature sequence | Lch-Mir-9-P3_5p (predicted) |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence | Lch-Mir-9-P3_3p* (predicted) |
mirBase accession | None |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|