MirGeneDB ID | Lch-Mir-9-P1 |
---|---|
Family name | MIR-9 (all species) |
Seed | CUUUGGU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-9-P2 Lch-Mir-9-P3 Lch-Mir-9-P4 |
Orthologues | Aca-Mir-9-P1 Ami-Mir-9-P1 Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P1 Cfa-Mir-9-P1 Cin-Mir-9 Cmi-Mir-9-P1 Cpi-Mir-9-P1 Cpo-Mir-9-P1 Cte-Mir-9 Dno-Mir-9-P1 Dre-Mir-9-P1a Dre-Mir-9-P1b Esc-Mir-9 Ete-Mir-9-P1 Gga-Mir-9-P1 Gja-Mir-9-P1 Gmo-Mir-9-P1a Gmo-Mir-9-P1b Hme-Mir-9-o1 Hsa-Mir-9-P1 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Loc-Mir-9-P1 Mal-Mir-9-P1a Mal-Mir-9-P1b Mdo-Mir-9-P1 Mml-Mir-9-P1 Mmu-Mir-9-P1 Mun-Mir-9-P1 Npo-Mir-9 Oan-Mir-9-P1 Obi-Mir-9 Ocu-Mir-9-P1 Ovu-Mir-9 Pbv-Mir-9-P1 Pma-Mir-9-o1 Pmi-Mir-9 Rno-Mir-9-P1 Sha-Mir-9-P1 Spt-Mir-9-P1 Spu-Mir-9 Sto-Mir-9-P1 Tgu-Mir-9-P1 Tni-Mir-9-P1a Tni-Mir-9-P1b Xbo-Mir-9 Xla-Mir-9-P1c Xla-Mir-9-P1d Xtr-Mir-9-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH126611.1: 2302489-2302550 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | UAAAGGAGACUCCGAGGGAGUCCGUUUCUGUCUUUGGUUAUCUAGCUGUAUGAGUGUUAUUAAGCCAUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUCCAAAACAACACAGAGUGAAGet precursor sequence |
Structure | 10 20 30 40 50 60 UAAAGGAGACUCCGAGG---| C UC G GUGUUA GAGUC GUUUCUG UUUGGUUAUCUAGCU UAUGA U UUCAG UAAAGAU AAGCCAAUAGAUCGA AUACU U AAGUGAGACACAACAAAACC^ - GA A ACCGAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Lch-Mir-9-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence | Lch-Mir-9-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|