MirGeneDB ID | Gga-Mir-9-P1 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-9-3
|
Paralogues |
Gga-Mir-9-P2
Gga-Mir-9-P3
Gga-Mir-9-P4
|
Orthologues |
Aca-Mir-9-P1
Agr-Mir-9
Ami-Mir-9-P1
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P1
Cfa-Mir-9-P1
Cin-Mir-9
Cja-Mir-9-P1
Cmi-Mir-9-P1
Cpi-Mir-9-P1
Cpo-Mir-9-P1
Cte-Mir-9
Dgr-Mir-9
Dno-Mir-9-P1
Dre-Mir-9-P1a
Dre-Mir-9-P1b
Eba-Mir-9
Eca-Mir-9-P1
Egr-Mir-9
Esc-Mir-9
Ete-Mir-9-P1
Gja-Mir-9-P1
Gmo-Mir-9-P1a
Gmo-Mir-9-P1b
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Hsa-Mir-9-P1
Isc-Mir-9
Laf-Mir-9-P1
Lan-Mir-9
Lch-Mir-9-P1
Lgi-Mir-9
Llo-Mir-9
Loc-Mir-9-P1
Mal-Mir-9-P1a
Mal-Mir-9-P1b
Mdo-Mir-9-P1
Mml-Mir-9-P1
Mmr-Mir-9-P1
Mmu-Mir-9-P1
Mom-Mir-9
Mun-Mir-9-P1
Npo-Mir-9
Oan-Mir-9-P1
Obi-Mir-9
Ocu-Mir-9-P1
Ofu-Mir-9
Ovu-Mir-9
Pab-Mir-9-P1
Pau-Mir-9
Pbv-Mir-9-P1
Pdu-Mir-9
Pma-Mir-9-o1
Pmi-Mir-9
Pve-Mir-9
Rno-Mir-9-P1
Rph-Mir-9
Sha-Mir-9-P1
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P1
Spu-Mir-9
Sto-Mir-9-P1
Tgu-Mir-9-P1
Tni-Mir-9-P1a
Tni-Mir-9-P1b
War-Mir-9
Xbo-Mir-9
Xla-Mir-9-P1c
Xla-Mir-9-P1d
Xtr-Mir-9-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
10: 13375349-13375410 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACGGCAGCCCCCGACGGAGGGAUGUUUCUGUCUUUGGUUAUCUAGCUGUAUGAGUGUUGUGGAGCCAUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUCCAGACCUGCGCGCCCGGGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACGGCAGCCCCCGACGGA --| UC G GUGUUG
GGGA UGUUUCUG UUUGGUUAUCUAGCU UAUGA U
CCUU GUAAAGAU AAGCCAAUAGAUCGA AUACU G
GGGGCCCGCGCGUCCAGA CA^ GA A ACCGAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Mature sequence |
Gga-Mir-9-P1_5p |
mirBase accession | MIMAT0001195 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Gga-Mir-9-P1_3p* |
mirBase accession | None |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|