MirGeneDB ID | Gga-Mir-9-P2 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-9-2
|
Paralogues |
Gga-Mir-9-P1
Gga-Mir-9-P3
Gga-Mir-9-P4
|
Orthologues |
Aca-Mir-9-P2
Agr-Mir-9
Ami-Mir-9-P2
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P2
Cfa-Mir-9-P2
Cin-Mir-9
Cja-Mir-9-P2
Cli-Mir-9-P2
Cmi-Mir-9-P2
Cpi-Mir-9-P2
Cpo-Mir-9-P2
Cte-Mir-9
Dgr-Mir-9
Dno-Mir-9-P2
Dre-Mir-9-P2a
Dre-Mir-9-P2b
Eba-Mir-9
Eca-Mir-9-P2
Egr-Mir-9
Esc-Mir-9
Ete-Mir-9-P2
Gja-Mir-9-P2
Gmo-Mir-9-P2b
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Hsa-Mir-9-P2
Isc-Mir-9
Laf-Mir-9-P2
Lan-Mir-9
Lch-Mir-9-P2
Lgi-Mir-9
Llo-Mir-9
Loc-Mir-9-P2
Mal-Mir-9-P2b
Mdo-Mir-9-P2
Mml-Mir-9-P2
Mmr-Mir-9-P2
Mmu-Mir-9-P2
Mom-Mir-9
Mun-Mir-9-P2
Neu-Mir-9-P2
Npo-Mir-9
Oan-Mir-9-P2
Obi-Mir-9
Ocu-Mir-9-P2
Ofu-Mir-9
Ovu-Mir-9
Pab-Mir-9-P2
Pau-Mir-9
Pbv-Mir-9-P2
Pdu-Mir-9
Pma-Mir-9-o2
Pmi-Mir-9
Pve-Mir-9
Rno-Mir-9-P2
Rph-Mir-9
Sha-Mir-9-P2
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P2
Spu-Mir-9
Sto-Mir-9-P2
Tgu-Mir-9-P2
Tni-Mir-9-P2b
War-Mir-9
Xbo-Mir-9
Xla-Mir-9-P2c
Xla-Mir-9-P2d
Xtr-Mir-9-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
Z: 60673644-60673703 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAUAAAGCUUUGAGGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAAGAUCAUCGUACAGCGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAUAAAGCUUUGAGGG---| C G UC G GUGUU
AAG GAGUU UUA UUUGGUUAUCUAGCU UAUGA U
UUC CUCAA AAU AAGCCAAUAGAUCGA AUACU U
GUGCGACAUGCUACUAGAAC^ - A GA A UCUGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Gga-Mir-9-P2_5p |
mirBase accession | MIMAT0001195 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Gga-Mir-9-P2_3p* |
mirBase accession | None |
Sequence |
37- AUAAAGCUAGAUAACCGAAAGUA -60
Get sequence
|