MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-9-P2

Family name MIR-9 (all species)
Seed CUUUGGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-9-2
Paralogues Ami-Mir-9-P1  Ami-Mir-9-P3  Ami-Mir-9-P4 
Orthologues Aca-Mir-9-P2  Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cja-Mir-9-P2  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Eba-Mir-9  Eca-Mir-9-P2  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Gmo-Mir-9-P2b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P2  Isc-Mir-9  Laf-Mir-9-P2  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P2  Mal-Mir-9-P2b  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmr-Mir-9-P2  Mmu-Mir-9-P2  Mom-Mir-9  Mun-Mir-9-P2  Neu-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P2  Pau-Mir-9  Pbv-Mir-9-P2  Pdu-Mir-9  Pma-Mir-9-o2  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P2  Rph-Mir-9  Sha-Mir-9-P2  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Tni-Mir-9-P2b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P2c  Xla-Mir-9-P2d  Xtr-Mir-9-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017707593.1: 13620894-13620953 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AACAAAUCCUUUGAGGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAUGAUCAUCGUGCAGCGUG
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Structure
        10           20        30        40        50         
AACAAAUCCUUUGAGGG---|  C     G   UC               G     GUGUU 
                    AAG GAGUU UUA  UUUGGUUAUCUAGCU UAUGA     U
                    UUC CUCAA AAU  AAGCCAAUAGAUCGA AUACU     U
GUGCGACGUGCUACUAGUAC^  -     A   GA               A     UCUGG 
.       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-9-P2_5p
mirBase accessionMIMAT0038027
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Ami-Mir-9-P2_3p*
mirBase accessionMIMAT0038028
Sequence 
37- AUAAAGCUAGAUAACCGAAAGUA -60
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