MirGeneDB ID | Ami-Mir-9-P4 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-9-4
|
Paralogues |
Ami-Mir-9-P1
Ami-Mir-9-P2
Ami-Mir-9-P3
|
Orthologues |
Aca-Mir-9-P4
Agr-Mir-9
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cmi-Mir-9-P4
Cpi-Mir-9-P4
Cte-Mir-9
Dgr-Mir-9
Dre-Mir-9-P4a
Dre-Mir-9-P4b
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Llo-Mir-9
Mal-Mir-9-P4a
Mal-Mir-9-P4b
Mdo-Mir-9-P4
Mom-Mir-9
Mun-Mir-9-P4
Neu-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pbv-Mir-9-P4
Pdu-Mir-9
Pma-Mir-9-o4
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sha-Mir-9-P4
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tgu-Mir-9-P4
Tni-Mir-9-P4a
Tni-Mir-9-P4b
War-Mir-9
Xbo-Mir-9
Xla-Mir-9-P4c
Xla-Mir-9-P4d
Xtr-Mir-9-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017713014.1: 4857-4916 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCUGUUUCCAAAGACCUGGGUGGGUUUUUGUCUUUGGUUAUCUAGCUGUAUGAGUGUAUGUGAUAUCAUAAAGCUAGACAACCGAAUGUAAAAACCGGCUCGCUCCUCUCCGCGACUCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUGUUUCCAAAGACCU--| G UC A G GUGUA
GGGU GGUUUUUG UUUGGUU UCUAGCU UAUGA U
CUCG CCAAAAAU AAGCCAA AGAUCGA AUACU G
CCCUCAGCGCCUCUCCUCG^ G GU C A AUAGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ami-Mir-9-P4_5p |
mirBase accession | MIMAT0038027 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Ami-Mir-9-P4_3p* |
mirBase accession | MIMAT0038029 |
Sequence |
37- AUAAAGCUAGACAACCGAAUGUA -60
Get sequence
|