MirGeneDB ID | Neu-Mir-9-P4 |
---|---|
Family name | MIR-9 (all species) |
Seed | AAAGCUG |
Species | Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID | |
Paralogues | Neu-Mir-9-P2 Neu-Mir-9-P3 |
Orthologues | Aca-Mir-9-P4 Agr-Mir-9 Ami-Mir-9-P4 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cli-Mir-9-P4 Cmi-Mir-9-P4 Cpi-Mir-9-P4 Cte-Mir-9 Dgr-Mir-9 Dre-Mir-9-P4a Dre-Mir-9-P4b Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gga-Mir-9-P4 Gja-Mir-9-P4 Gmo-Mir-9-P4a Gmo-Mir-9-P4b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P4 Lgi-Mir-9 Llo-Mir-9 Mal-Mir-9-P4a Mal-Mir-9-P4b Mdo-Mir-9-P4 Mom-Mir-9 Mun-Mir-9-P4 Npo-Mir-9 Oan-Mir-9-P4 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pbv-Mir-9-P4 Pdu-Mir-9 Pma-Mir-9-o4 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P4 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P4 Spu-Mir-9 Sto-Mir-9-P4 Tgu-Mir-9-P4 Tni-Mir-9-P4a Tni-Mir-9-P4b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P4c Xla-Mir-9-P4d Xtr-Mir-9-P4 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051816.1: 66163226-66163284 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGGGGGCCGGCUGCCCUGAGCUGGUUUUGAUCUUUGGUUUCCUAGCUGUGUGAGUAUUUCUGAAUCAUAAAGCUGGAGAACCGAAUGUGGAAACCAGCUGCUCCUGCACAGCCUGGCUAGet precursor sequence |
Structure | 10 20 30 40 50 AGGGGGCCGGCUGCCCUG--| G C UC G AGUAUU AGCUGGUUUU AU UUUGGUU CUAGCU UGUG \ UCGACCAAAG UG AAGCCAA GGUCGA AUAC U AUCGGUCCGACACGUCCUCG^ G U GA A UAAGUC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14) |
Star sequence | Neu-Mir-9-P4_5p* |
mirBase accession | None |
Sequence |
0- UCUUUGGUUUCCUAGCUGUGUG -22
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|
Mature sequence | Neu-Mir-9-P4_3p |
mirBase accession | None |
Sequence |
37- UAAAGCUGGAGAACCGAAUGUG -59
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