Mir-9-P4a

MirGeneDB ID

Dre-Mir-9-P4a

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-9-4

Paralogues

Dre-Mir-9-P1a Dre-Mir-9-P1b Dre-Mir-9-P2a Dre-Mir-9-P2b Dre-Mir-9-P3a Dre-Mir-9-P4b

Orthologues

Aca-Mir-9-P4 Agr-Mir-9 Ami-Mir-9-P4 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cli-Mir-9-P4 Cmi-Mir-9-P4 Cpi-Mir-9-P4 Cte-Mir-9 Dgr-Mir-9 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gga-Mir-9-P4 Gja-Mir-9-P4 Gmo-Mir-9-P4a Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P4 Lgi-Mir-9 Llo-Mir-9 Mal-Mir-9-P4a Mdo-Mir-9-P4 Mom-Mir-9 Mun-Mir-9-P4 Neu-Mir-9-P4 Npo-Mir-9 Oan-Mir-9-P4 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pbv-Mir-9-P4 Pdu-Mir-9 Pma-Mir-9-o4 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P4 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P4 Spu-Mir-9 Sto-Mir-9-P4 Tgu-Mir-9-P4 Tni-Mir-9-P4a War-Mir-9 Xbo-Mir-9 Xtr-Mir-9-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr22: 18254783-18254842 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCCCUUUAAGGCACAUGGGUUAGUUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUUUAUGUGAUAUCAUAAAGCUAGAGAACCGAAUGUAUAAACUAAUUCCAAAGACUUCGGAGCGCUU

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Structure

        10          20        30        40        50         
GUCCCUUUAAGGCACAU--|         UUCUC       A       G     GUUUA 
                   GGGUUAGUUU     UUUGGUU UCUAGCU UAUGA     U
                   CUUAAUCAAA     AAGCCAA AGAUCGA AUACU     G
UUCGCGAGGCUUCAGAAAC^         UAUGU       G       A     AUAGU 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-9-P4a_5p

mirBase accession

MIMAT0001769

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

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Proposed targets

TargetScanFish: dre-miR-9

Star sequence

Dre-Mir-9-P4a_3p*

mirBase accession

MIMAT0031932

Sequence

37- AUAAAGCUAGAGAACCGAAUGUA -60

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