MirGeneDB ID | Mdo-Mir-9-P4 |
Family name |
MIR-9 (all species) |
Seed |
AAAGCUG |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-9b
|
Paralogues |
Mdo-Mir-9-P1
Mdo-Mir-9-P2
Mdo-Mir-9-P3
|
Orthologues |
Aca-Mir-9-P4
Agr-Mir-9
Ami-Mir-9-P4
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cmi-Mir-9-P4
Cpi-Mir-9-P4
Cte-Mir-9
Dgr-Mir-9
Dre-Mir-9-P4a
Dre-Mir-9-P4b
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Llo-Mir-9
Mal-Mir-9-P4a
Mal-Mir-9-P4b
Mom-Mir-9
Mun-Mir-9-P4
Neu-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pbv-Mir-9-P4
Pdu-Mir-9
Pma-Mir-9-o4
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sha-Mir-9-P4
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tgu-Mir-9-P4
Tni-Mir-9-P4a
Tni-Mir-9-P4b
War-Mir-9
Xbo-Mir-9
Xla-Mir-9-P4c
Xla-Mir-9-P4d
Xtr-Mir-9-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (monDom5_add) |
3: 452650307-452650365 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGGGGCCUGCUGUCCUGAGCUGGUUUUGAUCUUUGGUUUCCUAGCUGUGUGAGUGUCUCUGAAUCAUAAAGCUGGAGAACCGAAUGUGGAAACCAGCUGCUCCUCCACAGCCUGGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGGGGCCUGCUGUCCUG--| G C UC G AGUGUC
AGCUGGUUUU AU UUUGGUU CUAGCU UGUG \
UCGACCAAAG UG AAGCCAA GGUCGA AUAC U
GUCGGUCCGACACCUCCUCG^ G U GA A UAAGUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Mdo-Mir-9-P4_5p* |
mirBase accession | MIMAT0028554 |
Sequence |
0- UCUUUGGUUUCCUAGCUGUGUG -22
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-9b-5p
|
Mature sequence |
Mdo-Mir-9-P4_3p |
mirBase accession | MIMAT0028555 |
Sequence |
37- UAAAGCUGGAGAACCGAAUGUG -59
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-9b-3p
|