Mir-9-o4

MirGeneDB ID

Pma-Mir-9-o4

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-9-o1 Pma-Mir-9-o2 Pma-Mir-9-o3 Pma-Mir-9-o5

Orthologues

Aca-Mir-9-P4 Agr-Mir-9 Ami-Mir-9-P4 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cli-Mir-9-P4 Cmi-Mir-9-P4 Cpi-Mir-9-P4 Cte-Mir-9 Dgr-Mir-9 Dre-Mir-9-P4a Dre-Mir-9-P4b Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gga-Mir-9-P4 Gja-Mir-9-P4 Gmo-Mir-9-P4a Gmo-Mir-9-P4b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P4 Lgi-Mir-9 Llo-Mir-9 Mal-Mir-9-P4a Mal-Mir-9-P4b Mdo-Mir-9-P4 Mom-Mir-9 Mun-Mir-9-P4 Neu-Mir-9-P4 Npo-Mir-9 Oan-Mir-9-P4 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pbv-Mir-9-P4 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P4 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P4 Spu-Mir-9 Sto-Mir-9-P4 Tgu-Mir-9-P4 Tni-Mir-9-P4a Tni-Mir-9-P4b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P4c Xla-Mir-9-P4d Xtr-Mir-9-P4

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046120.1: 4110016-4110075 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCACGCCGCGCGGGCCGGUGGCGGCGUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUUCUCGGCUUCAUAAAGCUAGAUUACCGAAAGUAAUGCCGCUUCCACGAGACGCUACCGCCACC

Get precursor sequence

Structure

        10          20         30        40        50         
GCCACGCCGCGCGGGCC--  U         -| C      U        G    AGUGUU 
                   GG GGCGGCGUU CU UUUGGU AUCUAGCU UAUG      C
                   CC UCGCCGUAA GA AAGCCA UAGAUCGA AUAC      U
CCACCGCCAUCGCAGAGCA  U         U^ -      U        A    UUCGGC 
.       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-9-o4_5p

mirBase accession

None

Sequence

0- UCUUUGGUUAUCUAGCUGUAUG -22

Get sequence

Star sequence

Pma-Mir-9-o4_3p*

mirBase accession

None

Sequence

38- UAAAGCUAGAUUACCGAAAGUA -60

Get sequence