MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-9-P4b

Family name MIR-9 (all species)
Seed CUUUGGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-9-P1a  Mal-Mir-9-P1b  Mal-Mir-9-P2b  Mal-Mir-9-P3a  Mal-Mir-9-P3b  Mal-Mir-9-P4a 
Orthologues Aca-Mir-9-P4  Agr-Mir-9  Ami-Mir-9-P4  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dgr-Mir-9  Dre-Mir-9-P4b  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Llo-Mir-9  Mdo-Mir-9-P4  Mom-Mir-9  Mun-Mir-9-P4  Neu-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pbv-Mir-9-P4  Pdu-Mir-9  Pma-Mir-9-o4  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sha-Mir-9-P4  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4b  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884860.1: 398082-398138 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCUUUAAGAGACUACGGGUCAGUUUGUGUCUUUGGUUAUCUAGCUGUAUGAGUUUUAAUUUCAUAAAGCUAGAGAACCGAAAGUAUGAACUGACGCCGAACACUUCGGAGCAGGG
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Structure
        10          20        30        40        50        
CCCCUUUAAGAGACUAC-  -|      UG  UC       A       G     GUUU 
                  GG GUCAGUU  UG  UUUGGUU UCUAGCU UAUGA    \
                  CC CAGUCAA  AU  AAGCCAA AGAUCGA AUACU    U
GGGACGAGGCUUCACAAG  G^      GU  GA       G       A     UUAA 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-9-P4b_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Mal-Mir-9-P4b_3p*
mirBase accessionNone
Sequence 
34- AUAAAGCUAGAGAACCGAAAGUA -57
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