MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-9-P4a

Family name MIR-9 (all species)
Seed CUUUGGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-9-P1a  Mal-Mir-9-P1b  Mal-Mir-9-P2b  Mal-Mir-9-P3a  Mal-Mir-9-P3b  Mal-Mir-9-P4b 
Orthologues Aca-Mir-9-P4  Ami-Mir-9-P4  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dre-Mir-9-P4a  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4a  Hme-Mir-9-o4  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Mdo-Mir-9-P4  Mun-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ovu-Mir-9  Pbv-Mir-9-P4  Pma-Mir-9-o4  Pmi-Mir-9  Sha-Mir-9-P4  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4a  Xbo-Mir-9  Xtr-Mir-9-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884810.1: 667688-667747 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
NNNNNNNNNNNNNNNNNNNNUUUUUUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUUUAUGAAAUAUCAUAAAGCUAGAGAACCGAAUGUAUAAACUAAUUCUGCAGUCGUCACGGCGGAG
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Structure
        10        20        30          40        50         
NNNNNNNNNNNNNNNNNNNNUUUUUUUUUCUC--|      A       G     GUUUA 
                                  UUUGGUU UCUAGCU UAUGA     U
                                  AAGCCAA AGAUCGA AUACU     G
GAGGCGGCACUGCUGACGUCUUAAUCAAAUAUGU^      G       A     AUAAA 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm. CHECK THE P4S IN OTHER FISH
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-9-P4a_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Mal-Mir-9-P4a_3p*
mirBase accessionNone
Sequence 
37- AUAAAGCUAGAGAACCGAAUGUA -60
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