MirGeneDB ID | Cmi-Mir-9-P4 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-9-P1
Cmi-Mir-9-P2
|
Orthologues |
Aca-Mir-9-P4
Agr-Mir-9
Ami-Mir-9-P4
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cpi-Mir-9-P4
Cte-Mir-9
Dgr-Mir-9
Dre-Mir-9-P4a
Dre-Mir-9-P4b
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Llo-Mir-9
Mal-Mir-9-P4a
Mal-Mir-9-P4b
Mdo-Mir-9-P4
Mom-Mir-9
Mun-Mir-9-P4
Neu-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pbv-Mir-9-P4
Pdu-Mir-9
Pma-Mir-9-o4
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sha-Mir-9-P4
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tgu-Mir-9-P4
Tni-Mir-9-P4a
Tni-Mir-9-P4b
War-Mir-9
Xbo-Mir-9
Xla-Mir-9-P4c
Xla-Mir-9-P4d
Xtr-Mir-9-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635918.1: 2272447-2272507 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAGAAGCUUUAUCAAGAGGCCAGUUUUUCUCUUUGGUUUUCUAGCUGUAUGAGUGUGUUAUACCUUCAUAAAGCUAGACAACCGAAUGUAAGAACGGCUUUGAAUUUCAACCCUGUGGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAGAAGCUUUAUCAAG---| A CUC U G GUGUGU
AGGCC GUUUUU UUUGGUU UCUAGCU UAUGA \
UUCGG CAAGAA AAGCCAA AGAUCGA AUACU U
UAGGUGUCCCAACUUUAAGU^ - UGU C A UCCAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cmi-Mir-9-P4_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUUUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Cmi-Mir-9-P4_3p* |
mirBase accession | None |
Sequence |
38- AUAAAGCUAGACAACCGAAUGUA -61
Get sequence
|