MirGeneDB ID | Xla-Mir-9-P4c |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-9-P1c
Xla-Mir-9-P1d
Xla-Mir-9-P2c
Xla-Mir-9-P2d
Xla-Mir-9-P3c
Xla-Mir-9-P3d
Xla-Mir-9-P4d
|
Orthologues |
Aca-Mir-9-P4
Agr-Mir-9
Ami-Mir-9-P4
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cmi-Mir-9-P4
Cpi-Mir-9-P4
Cte-Mir-9
Dgr-Mir-9
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Llo-Mir-9
Mdo-Mir-9-P4
Mom-Mir-9
Mun-Mir-9-P4
Neu-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pbv-Mir-9-P4
Pdu-Mir-9
Pma-Mir-9-o4
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sha-Mir-9-P4
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tgu-Mir-9-P4
War-Mir-9
Xbo-Mir-9
Xtr-Mir-9-P4
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030724.1: 110894599-110894658 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAAGUAUCCUGGCUUUGAAUUGGUUUCUGUCUUUGGUUACCUAGCUGUAUGAGUAUAUCUAAUGUCAUAAAGCUAGACAACCGAACGUAUAAACCAGUUCCUCCUUCUACACAGCAGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAAGUAUCCUGGCUUU--| C UC AC G GUAUA
GAAUUGGUUU UG UUUGGUU CUAGCU UAUGA U
CUUGACCAAA AU AAGCCAA GAUCGA AUACU C
CAGACGACACAUCUUCCUC^ U GC CA A GUAAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-9-P4c_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUACCUAGCUGUAUGA -23
Get sequence
|
Co-mature sequence |
Xla-Mir-9-P4c_3p |
mirBase accession | None |
Sequence |
37- AUAAAGCUAGACAACCGAACGUA -60
Get sequence
|