MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-9-P4

Family name MIR-9 (all species)
Seed CUUUGGU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-9-P1  Tgu-Mir-9-P2  Tgu-Mir-9-P3 
Orthologues Aca-Mir-9-P4  Ami-Mir-9-P4  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dre-Mir-9-P4a  Dre-Mir-9-P4b  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b  Hme-Mir-9-o4  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Mal-Mir-9-P4a  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Mun-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ovu-Mir-9  Pbv-Mir-9-P4  Pma-Mir-9-o4  Pmi-Mir-9  Sha-Mir-9-P4  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tni-Mir-9-P4a  Tni-Mir-9-P4b  Xbo-Mir-9  Xla-Mir-9-P4c  Xla-Mir-9-P4d  Xtr-Mir-9-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)
28: 413624-413683 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGCUGGCCGCAGACCUGGGAGGGCUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUGUCAGAUAUCAUAAAGCUAGAGAACCGAAUGUAAAAUCCCUCCCGCCACCCUCGGCCGCGGGC
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Structure
        10          20        30        40        50         
GCGCUGGCCGCAGACCU--|      C    CUC       A       G    AGUGUG 
                   GGGAGGG UUUU   UUUGGUU UCUAGCU UAUG      U
                   CCCUCCC AAAA   AAGCCAA AGAUCGA AUAC      C
CGGGCGCCGGCUCCCACCG^      U    UGU       G       A    UAUAGA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-9-P4_5p

mirBase accessionNone
Sequence
0- UCUUUGGUUAUCUAGCUGUAUG -22
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Co-mature sequence

Tgu-Mir-9-P4_3p

mirBase accessionNone
Sequence
38- UAAAGCUAGAGAACCGAAUGUA -60
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