MirGeneDB ID | Tgu-Mir-9-P4 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
|
Paralogues |
Tgu-Mir-9-P1
Tgu-Mir-9-P2
Tgu-Mir-9-P3
|
Orthologues |
Aca-Mir-9-P4
Ami-Mir-9-P4
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cmi-Mir-9-P4
Cpi-Mir-9-P4
Cte-Mir-9
Dre-Mir-9-P4a
Dre-Mir-9-P4b
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
Hme-Mir-9-o4
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Mal-Mir-9-P4a
Mal-Mir-9-P4b
Mdo-Mir-9-P4
Mun-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ovu-Mir-9
Pbv-Mir-9-P4
Pma-Mir-9-o4
Pmi-Mir-9
Sha-Mir-9-P4
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tni-Mir-9-P4a
Tni-Mir-9-P4b
Xbo-Mir-9
Xla-Mir-9-P4c
Xla-Mir-9-P4d
Xtr-Mir-9-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (TaeGut1_add) |
28: 413624-413683 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGCUGGCCGCAGACCUGGGAGGGCUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUGUCAGAUAUCAUAAAGCUAGAGAACCGAAUGUAAAAUCCCUCCCGCCACCCUCGGCCGCGGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGCUGGCCGCAGACCU--| C CUC A G AGUGUG
GGGAGGG UUUU UUUGGUU UCUAGCU UAUG U
CCCUCCC AAAA AAGCCAA AGAUCGA AUAC C
CGGGCGCCGGCUCCCACCG^ U UGU G A UAUAGA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tgu-Mir-9-P4_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUG -22
Get sequence
|
Co-mature sequence |
Tgu-Mir-9-P4_3p |
mirBase accession | None |
Sequence |
38- UAAAGCUAGAGAACCGAAUGUA -60
Get sequence
|