Mir-9-P4b

MirGeneDB ID

Gmo-Mir-9-P4b

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-9-6

Paralogues

Gmo-Mir-9-P1a Gmo-Mir-9-P1b Gmo-Mir-9-P2b Gmo-Mir-9-P3a Gmo-Mir-9-P3b Gmo-Mir-9-P4a

Orthologues

Aca-Mir-9-P4 Agr-Mir-9 Ami-Mir-9-P4 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cli-Mir-9-P4 Cmi-Mir-9-P4 Cpi-Mir-9-P4 Cte-Mir-9 Dgr-Mir-9 Dre-Mir-9-P4b Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gga-Mir-9-P4 Gja-Mir-9-P4 Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P4 Lgi-Mir-9 Llo-Mir-9 Mal-Mir-9-P4b Mdo-Mir-9-P4 Mom-Mir-9 Mun-Mir-9-P4 Neu-Mir-9-P4 Npo-Mir-9 Oan-Mir-9-P4 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pbv-Mir-9-P4 Pdu-Mir-9 Pma-Mir-9-o4 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P4 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P4 Spu-Mir-9 Sto-Mir-9-P4 Tgu-Mir-9-P4 Tni-Mir-9-P4b War-Mir-9 Xbo-Mir-9 Xtr-Mir-9-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_3660: 680877-680933 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCCUUUAAGAGACGACGGGUUAGUUUGUGUCUUUGGUUAUCUAGCUGUAUGAGUUUUAAUUUCAUAAAGCUAGAGAACCGAAAGUAUUAACUAAUCCCCAUGACUUCGGAGCCGUG

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Structure

        10          20        30        40        50        
GCCCUUUAAGAGACGAC--|        U   UC       A       G     GUUU 
                   GGGUUAGUU GUG  UUUGGUU UCUAGCU UAUGA    \
                   CCUAAUCAA UAU  AAGCCAA AGAUCGA AUACU    U
GUGCCGAGGCUUCAGUACC^        U   GA       G       A     UUAA 
     110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut -1 on the 3p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-9-P4b_5p

mirBase accession

MIMAT0044076

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

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Star sequence

Gmo-Mir-9-P4b_3p*

mirBase accession

MIMAT0044235

Sequence

34- AUAAAGCUAGAGAACCGAAAGUA -57

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