MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-9-P1b

Family name MIR-9 (all species)
Seed CUUUGGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-9-3
Paralogues Gmo-Mir-9-P1a  Gmo-Mir-9-P2b  Gmo-Mir-9-P3a  Gmo-Mir-9-P3b  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b 
Orthologues Aca-Mir-9-P1  Agr-Mir-9  Ami-Mir-9-P1  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cja-Mir-9-P1  Cmi-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1b  Eba-Mir-9  Eca-Mir-9-P1  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P1  Isc-Mir-9  Laf-Mir-9-P1  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P1  Mal-Mir-9-P1b  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmr-Mir-9-P1  Mmu-Mir-9-P1  Mom-Mir-9  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P1  Pau-Mir-9  Pbv-Mir-9-P1  Pdu-Mir-9  Pma-Mir-9-o1  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P1  Rph-Mir-9  Sha-Mir-9-P1  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Tni-Mir-9-P1b  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_3319: 19161-19222 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P1b)		 Mir-9-P1b GeneScaffold_3319: 19161-19222 [-] UCSC Ensembl
Mir-7-P1b GeneScaffold_3319: 52966-53029 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCUCGAAUGCGAUGGGAGGCUGAUCCUGUCUUUGGUUAUCUAGCUGUAUGAGUGUUAAGCCUCCUUCAUAAAGCUAGCUAACCGAAAGUAGGACUGGCCUCCAAAGCCUCCCCCCUCUGG
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Structure
        10          20        30        40        50        60
AGGCUCGAAUGCGAUGG--|     GA     UC        U      G     GUGUUA 
                   GAGGCU  UCCUG  UUUGGUUA CUAGCU UAUGA      A
                   CUCCGG  AGGAU  AAGCCAAU GAUCGA AUACU      G
GGUCUCCCCCCUCCGAAAC^     UC     GA        C      A     UCCUCC 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-9-P1b_5p
mirBase accessionMIMAT0044076
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Gmo-Mir-9-P1b_3p*
mirBase accessionMIMAT0044218
Sequence 
39- AUAAAGCUAGCUAACCGAAAGUA -62
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