MirGeneDB ID | Cmi-Mir-9-P1 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-9-P2
Cmi-Mir-9-P4
|
Orthologues |
Aca-Mir-9-P1
Agr-Mir-9
Ami-Mir-9-P1
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P1
Cfa-Mir-9-P1
Cin-Mir-9
Cja-Mir-9-P1
Cpi-Mir-9-P1
Cpo-Mir-9-P1
Cte-Mir-9
Dgr-Mir-9
Dno-Mir-9-P1
Dre-Mir-9-P1a
Dre-Mir-9-P1b
Eba-Mir-9
Eca-Mir-9-P1
Egr-Mir-9
Esc-Mir-9
Ete-Mir-9-P1
Gga-Mir-9-P1
Gja-Mir-9-P1
Gmo-Mir-9-P1a
Gmo-Mir-9-P1b
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Hsa-Mir-9-P1
Isc-Mir-9
Laf-Mir-9-P1
Lan-Mir-9
Lch-Mir-9-P1
Lgi-Mir-9
Llo-Mir-9
Loc-Mir-9-P1
Mal-Mir-9-P1a
Mal-Mir-9-P1b
Mdo-Mir-9-P1
Mml-Mir-9-P1
Mmr-Mir-9-P1
Mmu-Mir-9-P1
Mom-Mir-9
Mun-Mir-9-P1
Npo-Mir-9
Oan-Mir-9-P1
Obi-Mir-9
Ocu-Mir-9-P1
Ofu-Mir-9
Ovu-Mir-9
Pab-Mir-9-P1
Pau-Mir-9
Pbv-Mir-9-P1
Pdu-Mir-9
Pma-Mir-9-o1
Pmi-Mir-9
Pve-Mir-9
Rno-Mir-9-P1
Rph-Mir-9
Sha-Mir-9-P1
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P1
Spu-Mir-9
Sto-Mir-9-P1
Tgu-Mir-9-P1
Tni-Mir-9-P1a
Tni-Mir-9-P1b
War-Mir-9
Xbo-Mir-9
Xla-Mir-9-P1c
Xla-Mir-9-P1d
Xtr-Mir-9-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636065.1: 729079-729138 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCCGGGAGUAGGAGCGGAAGCGGCUGCUGUCUUUGGUUAUCUAGCUGUAUGAGUUUAUUCACCGUCAUAAAGCUAAAUAACCGAAAGUAGGAGCCCCUUCCCCAGCCUCGCACCGCCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCCGGGAGUAGGAGCG--| C G UC C G GUUUA
GAAG GGCU CUG UUUGGUUAU UAGCU UAUGA U
CUUC CCGA GAU AAGCCAAUA AUCGA AUACU U
ACCCGCCACGCUCCGACCC^ C G GA A A GCCAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-9-P1_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Cmi-Mir-9-P1_3p* |
mirBase accession | None |
Sequence |
37- AUAAAGCUAAAUAACCGAAAGUA -60
Get sequence
|