MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-9-P1

Family name MIR-9 (all species)
Seed CUUUGGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-9-3
Paralogues Ami-Mir-9-P2  Ami-Mir-9-P3  Ami-Mir-9-P4 
Orthologues Aca-Mir-9-P1  Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cja-Mir-9-P1  Cmi-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1a  Dre-Mir-9-P1b  Eba-Mir-9  Eca-Mir-9-P1  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Gmo-Mir-9-P1a  Gmo-Mir-9-P1b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P1  Isc-Mir-9  Laf-Mir-9-P1  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P1  Mal-Mir-9-P1a  Mal-Mir-9-P1b  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmr-Mir-9-P1  Mmu-Mir-9-P1  Mom-Mir-9  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P1  Pau-Mir-9  Pbv-Mir-9-P1  Pdu-Mir-9  Pma-Mir-9-o1  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P1  Rph-Mir-9  Sha-Mir-9-P1  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Tni-Mir-9-P1a  Tni-Mir-9-P1b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P1c  Xla-Mir-9-P1d  Xtr-Mir-9-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713709.1: 12355229-12355290 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGAGCCCGGGAGAAGGAGGGCUGUUUCUGUCUUUGGUUAUCUAGCUGUAUGAGUGUUCUCGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUCCCCACCGGCGUCCUUCGGG
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Structure
        10          20        30        40        50        60
GAGAGCCCGGGAGAAGGA--|  CU       UC               G     GUGUUC 
                    GGG  GUUUCUG  UUUGGUUAUCUAGCU UAUGA      U
                    UUC  UAAAGAU  AAGCCAAUAGAUCGA AUACU      C
GGGCUUCCUGCGGCCACCCC^  AG       GA               A     GCCGAG 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-9-P1_5p
mirBase accessionMIMAT0038027
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Ami-Mir-9-P1_3p*
mirBase accessionMIMAT0038028
Sequence 
39- AUAAAGCUAGAUAACCGAAAGUA -62
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