MirGeneDB ID | Ami-Mir-9-P3 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-9-1
|
Paralogues |
Ami-Mir-9-P1
Ami-Mir-9-P2
Ami-Mir-9-P4
|
Orthologues |
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P3
Cfa-Mir-9-P3
Cin-Mir-9
Cli-Mir-9-P3
Cpi-Mir-9-P3
Cpo-Mir-9-P3
Cte-Mir-9
Dno-Mir-9-P3
Dre-Mir-9-P3a
Esc-Mir-9
Ete-Mir-9-P3
Gga-Mir-9-P3
Gja-Mir-9-P3
Gmo-Mir-9-P3a
Gmo-Mir-9-P3b
Hme-Mir-9-o3
Hsa-Mir-9-P3
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P3
Lgi-Mir-9
Loc-Mir-9-P3
Mal-Mir-9-P3a
Mal-Mir-9-P3b
Mdo-Mir-9-P3
Mml-Mir-9-P3
Mmu-Mir-9-P3
Mun-Mir-9-P3
Npo-Mir-9
Oan-Mir-9-P3-v1
Oan-Mir-9-P3-v2
Obi-Mir-9
Ocu-Mir-9-P3
Ovu-Mir-9
Pbv-Mir-9-P3
Pma-Mir-9-o3
Pmi-Mir-9
Rno-Mir-9-P3
Sha-Mir-9-P3
Spt-Mir-9-P3
Spu-Mir-9
Tgu-Mir-9-P3
Tni-Mir-9-P3a
Tni-Mir-9-P3b
Xbo-Mir-9
Xla-Mir-9-P3c
Xla-Mir-9-P3d
Xtr-Mir-9-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017709017.1: 781222-781283 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GAUGGCGGAGACUUCAGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGUGUCAAUUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUUACACGCCUGAGGAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUGGCGGAGACUUCAG---| GUUG UC G GUGGUG
GGGUUG UUA UUUGGUUAUCUAGCU UAUGA U
CCCAAU AAU AAGCCAAUAGAUCGA AUACU C
AGGAGGAGUCCGCACAUUAC^ AAA- GA A UCUUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ami-Mir-9-P3_5p |
mirBase accession | MIMAT0038027 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Ami-Mir-9-P3_3p* |
mirBase accession | MIMAT0038028 |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|