MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-9-o3

Family name MIR-9 (all species)
Seed CUUUGGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-9-o1  Pma-Mir-9-o2  Pma-Mir-9-o4  Pma-Mir-9-o5 
Orthologues Agr-Mir-9  Ami-Mir-9-P3  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cja-Mir-9-P3  Cli-Mir-9-P3  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P3  Dre-Mir-9-P3a  Eba-Mir-9  Eca-Mir-9-P3  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P3  Gga-Mir-9-P3  Gja-Mir-9-P3  Gmo-Mir-9-P3a  Gmo-Mir-9-P3b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P3  Isc-Mir-9  Laf-Mir-9-P3  Lan-Mir-9  Lch-Mir-9-P3  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P3  Mal-Mir-9-P3a  Mal-Mir-9-P3b  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mmr-Mir-9-P3  Mmu-Mir-9-P3  Mom-Mir-9  Mun-Mir-9-P3  Neu-Mir-9-P3  Npo-Mir-9  Oan-Mir-9-P3-v1  Oan-Mir-9-P3-v2  Obi-Mir-9  Ocu-Mir-9-P3  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P3  Pau-Mir-9  Pbv-Mir-9-P3  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P3  Rph-Mir-9  Sha-Mir-9-P3  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P3  Spu-Mir-9  Tgu-Mir-9-P3  Tni-Mir-9-P3a  Tni-Mir-9-P3b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xtr-Mir-9-P3 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046081.1: 4287212-4287271 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCACAAGCCGCGCACGGAACUGGAUUUUAUCUUUGGUUAUCUAGCUGUAUGAGUGCAUUAGUCGUCAUAAAGCUAGAUAACCGAAAGUAAAAACCCGCUCCCGCUGUCGCCACCCGACG
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Structure
        10        20          30        40        50         
CGCACAAGCCGCGCACGGAACU--| A     UC               G    AGUGCA 
                        GG UUUUA  UUUGGUUAUCUAGCU UAUG      U
                        CC AAAAU  AAGCCAAUAGAUCGA AUAC      U
GCAGCCCACCGCUGUCGCCCUCGC^ A     GA               A    UGCUGA 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-9-o3_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUG -22
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Star sequence

Pma-Mir-9-o3_3p*
mirBase accessionNone
Sequence 
38- UAAAGCUAGAUAACCGAAAGUA -60
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