MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-9-o2

Family name MIR-9 (all species)
Seed CUUUGGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-9a-2
Paralogues Pma-Mir-9-o1  Pma-Mir-9-o3  Pma-Mir-9-o4  Pma-Mir-9-o5 
Orthologues Aca-Mir-9-P2  Agr-Mir-9  Ami-Mir-9-P2  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cja-Mir-9-P2  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Eba-Mir-9  Eca-Mir-9-P2  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Gmo-Mir-9-P2b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P2  Isc-Mir-9  Laf-Mir-9-P2  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P2  Mal-Mir-9-P2b  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmr-Mir-9-P2  Mmu-Mir-9-P2  Mom-Mir-9  Mun-Mir-9-P2  Neu-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P2  Pau-Mir-9  Pbv-Mir-9-P2  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P2  Rph-Mir-9  Sha-Mir-9-P2  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Tni-Mir-9-P2b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P2c  Xla-Mir-9-P2d  Xtr-Mir-9-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046069.1: 28947955-28948015 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACGCUGCAGGAGGUUUCUAGUAGGUGGUAUCUUUGGUUAUCUAGCUGUAUGAGUGUGUCUGGCCGUCAUAAAGCUAGAUAACCGAAAGUACCAACGACUUCCAUAACCGCCAACCACAAG
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Structure
        10          20        30        40        50          
UACGCUGCAGGAGGUUUCU--|  AGG     UC               G    AGUGUGU 
                     AGU   UGGUA  UUUGGUUAUCUAGCU UAUG       \
                     UCA   ACCAU  AAGCCAAUAGAUCGA AUAC       C
GAACACCAACCGCCAAUACCU^  GCA     GA               A    UGCCGGU 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-9-o2_5p
mirBase accessionMIMAT0019373
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUG -22
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Star sequence

Pma-Mir-9-o2_3p*
mirBase accessionMIMAT0019374
Sequence 
39- UAAAGCUAGAUAACCGAAAGUA -61
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