| MirGeneDB ID | Spt-Mir-9-P2 |
|---|---|
| Family name | MIR-9 (all species) |
| Seed | CUUUGGU |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-9-P1 Spt-Mir-9-P3 Spt-Mir-9-P4 |
| Orthologues | Aca-Mir-9-P2 Ami-Mir-9-P2 Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P2 Cfa-Mir-9-P2 Cin-Mir-9 Cli-Mir-9-P2 Cmi-Mir-9-P2 Cpi-Mir-9-P2 Cpo-Mir-9-P2 Cte-Mir-9 Dno-Mir-9-P2 Dre-Mir-9-P2a Dre-Mir-9-P2b Esc-Mir-9 Ete-Mir-9-P2 Gga-Mir-9-P2 Gja-Mir-9-P2 Gmo-Mir-9-P2b Hme-Mir-9-o2 Hsa-Mir-9-P2 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P2 Lgi-Mir-9 Loc-Mir-9-P2 Mal-Mir-9-P2b Mdo-Mir-9-P2 Mml-Mir-9-P2 Mmu-Mir-9-P2 Mun-Mir-9-P2 Npo-Mir-9 Oan-Mir-9-P2 Obi-Mir-9 Ocu-Mir-9-P2 Ovu-Mir-9 Pbv-Mir-9-P2 Pma-Mir-9-o2 Pmi-Mir-9 Rno-Mir-9-P2 Sha-Mir-9-P2 Spu-Mir-9 Sto-Mir-9-P2 Tgu-Mir-9-P2 Tni-Mir-9-P2b Xbo-Mir-9 Xla-Mir-9-P2c Xla-Mir-9-P2d Xtr-Mir-9-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014630.1: 2369426-2369485 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAAAAAUCCUGUGAGGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUGUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAUGAUCAUCGUGCAGCGUGGet precursor sequence |
| Structure | 10 20 30 40 50 AAAAAAUCCUGUGAGGG---| C G UC G GUGUG AAG GAGUU UUA UUUGGUUAUCUAGCU UAUGA U UUC CUCAA AAU AAGCCAAUAGAUCGA AUACU U GUGCGACGUGCUACUAGUAC^ - A GA A UCUGG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Spt-Mir-9-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
| Co-mature sequence | Spt-Mir-9-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AUAAAGCUAGAUAACCGAAAGUA -60
Get sequence
|
