MirGeneDB ID | Lch-Mir-9-P2 |
---|---|
Family name | MIR-9 (all species) |
Seed | CUUUGGU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-9-P1 Lch-Mir-9-P3 Lch-Mir-9-P4 |
Orthologues | Aca-Mir-9-P2 Ami-Mir-9-P2 Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P2 Cfa-Mir-9-P2 Cin-Mir-9 Cli-Mir-9-P2 Cmi-Mir-9-P2 Cpi-Mir-9-P2 Cpo-Mir-9-P2 Cte-Mir-9 Dno-Mir-9-P2 Dre-Mir-9-P2a Dre-Mir-9-P2b Esc-Mir-9 Ete-Mir-9-P2 Gga-Mir-9-P2 Gja-Mir-9-P2 Gmo-Mir-9-P2b Hme-Mir-9-o2 Hsa-Mir-9-P2 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Loc-Mir-9-P2 Mal-Mir-9-P2b Mdo-Mir-9-P2 Mml-Mir-9-P2 Mmu-Mir-9-P2 Mun-Mir-9-P2 Npo-Mir-9 Oan-Mir-9-P2 Obi-Mir-9 Ocu-Mir-9-P2 Ovu-Mir-9 Pbv-Mir-9-P2 Pma-Mir-9-o2 Pmi-Mir-9 Rno-Mir-9-P2 Sha-Mir-9-P2 Spt-Mir-9-P2 Spu-Mir-9 Sto-Mir-9-P2 Tgu-Mir-9-P2 Tni-Mir-9-P2b Xbo-Mir-9 Xla-Mir-9-P2c Xla-Mir-9-P2d Xtr-Mir-9-P2 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH126923.1: 939004-939063 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | AGAAAGUCAUGGUUGGGAAGUGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUGUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUGCUUCUAGGAUCUUCGUGGAGCUGGet precursor sequence |
Structure | 10 20 30 40 50 AGAAAGUCAUGGUUGGG---| G G UC G GUGUG AAGU AGUU UUA UUUGGUUAUCUAGCU UAUGA U UUCG UCAA AAU AAGCCAAUAGAUCGA AUACU U GUCGAGGUGCUUCUAGGAUC^ - A GA A UCUGG . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Lch-Mir-9-P2_5p (predicted) |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence | Lch-Mir-9-P2_3p* (predicted) |
mirBase accession | None |
Sequence |
37- AUAAAGCUAGAUAACCGAAAGUA -60
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|