MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-9-P2a

Family name MIR-9 (all species)
Seed CUUUGGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-9-2
Paralogues Dre-Mir-9-P1a  Dre-Mir-9-P1b  Dre-Mir-9-P2b  Dre-Mir-9-P3a  Dre-Mir-9-P4a  Dre-Mir-9-P4b 
Orthologues Aca-Mir-9-P2  Agr-Mir-9  Ami-Mir-9-P2  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cja-Mir-9-P2  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P2  Eba-Mir-9  Eca-Mir-9-P2  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P2  Isc-Mir-9  Laf-Mir-9-P2  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P2  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmr-Mir-9-P2  Mmu-Mir-9-P2  Mom-Mir-9  Mun-Mir-9-P2  Neu-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P2  Pau-Mir-9  Pbv-Mir-9-P2  Pdu-Mir-9  Pma-Mir-9-o2  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P2  Rph-Mir-9  Sha-Mir-9-P2  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr10: 43535995-43536054 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGACUUUUGCACUUGGAGGCGUGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUGCUGGCCGUCAUAAAGCUAGAUAACCGAAAGUAAGAGCCGCUUCUAUCAGCAACGUAUGGAGC
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Structure
        10           20        30        40        50         
GUGACUUUUGCACUUGG---|    U   G   UC               G     GUGUG 
                    AGGCG GUU UUA  UUUGGUUAUCUAGCU UAUGA     C
                    UUCGC CGA AAU  AAGCCAAUAGAUCGA AUACU     U
CGAGGUAUGCAACGACUAUC^    -   G   GA               A     GCCGG 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-9-P2a_5p
mirBase accessionMIMAT0001769
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Proposed targets TargetScanFish: dre-miR-9
Star sequence

Dre-Mir-9-P2a_3p*
mirBase accessionMIMAT0003156
Sequence 
37- AUAAAGCUAGAUAACCGAAAGUA -60
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