MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-9-P1b

Family name MIR-9 (all species)
Seed CUUUGGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-9-6
Paralogues Dre-Mir-9-P1a  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Dre-Mir-9-P3a  Dre-Mir-9-P4a  Dre-Mir-9-P4b 
Orthologues Aca-Mir-9-P1  Agr-Mir-9  Ami-Mir-9-P1  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cja-Mir-9-P1  Cmi-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P1  Eba-Mir-9  Eca-Mir-9-P1  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Gmo-Mir-9-P1b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P1  Isc-Mir-9  Laf-Mir-9-P1  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P1  Mal-Mir-9-P1b  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmr-Mir-9-P1  Mmu-Mir-9-P1  Mom-Mir-9  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P1  Pau-Mir-9  Pbv-Mir-9-P1  Pdu-Mir-9  Pma-Mir-9-o1  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P1  Rph-Mir-9  Sha-Mir-9-P1  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Tni-Mir-9-P1b  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr7: 14379556-14379617 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAAAAGUUUUGACAGGAGGUAGUUGCUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUUAUCUGCCUUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGUCCUCCUUAACUGCAUACAAGUUG
Get precursor sequence
Structure
        10          20        30        40        50        60
CAAAAAAGUUUUGACAG--|   UA   G   UC               G     GUGUUU 
                   GAGG  GUU CUA  UUUGGUUAUCUAGCU UAUGA      A
                   CUCC  UAA GAU  AAGCCAAUAGAUCGA AUACU      U
GUUGAACAUACGUCAAUUC^   UG   A   GA               A     UCCGUC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-9-P1b_5p
mirBase accessionMIMAT0001769
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Proposed targets TargetScanFish: dre-miR-9
Star sequence

Dre-Mir-9-P1b_3p*
mirBase accessionMIMAT0003156
Sequence 
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence