MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-9-P3a

Family name MIR-9 (all species)
Seed CUUUGGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-9-1
Paralogues Dre-Mir-9-P1a  Dre-Mir-9-P1b  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Dre-Mir-9-P4a  Dre-Mir-9-P4b 
Orthologues Agr-Mir-9  Ami-Mir-9-P3  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cja-Mir-9-P3  Cli-Mir-9-P3  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P3  Eba-Mir-9  Eca-Mir-9-P3  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P3  Gga-Mir-9-P3  Gja-Mir-9-P3  Gmo-Mir-9-P3a  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P3  Isc-Mir-9  Laf-Mir-9-P3  Lan-Mir-9  Lch-Mir-9-P3  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P3  Mal-Mir-9-P3a  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mmr-Mir-9-P3  Mmu-Mir-9-P3  Mom-Mir-9  Mun-Mir-9-P3  Neu-Mir-9-P3  Npo-Mir-9  Oan-Mir-9-P3-v1  Oan-Mir-9-P3-v2  Obi-Mir-9  Ocu-Mir-9-P3  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P3  Pau-Mir-9  Pbv-Mir-9-P3  Pdu-Mir-9  Pma-Mir-9-o3  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P3  Rph-Mir-9  Sha-Mir-9-P3  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P3  Spu-Mir-9  Tgu-Mir-9-P3  Tni-Mir-9-P3a  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr16: 29216288-29216349 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGACGGGUGGCCGGAGGGGUUGGCUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUAUUCAUUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAAUCCCAUUACACACCUGAAAGGCA
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Structure
        10          20        30        40        50        60
UGGACGGGUGGCCGGAG--|  UUGGC     UC               G     GUGUUA 
                   GGG     UGUUA  UUUGGUUAUCUAGCU UAUGA      U
                   CCC     ACAAU  AAGCCAAUAGAUCGA AUACU      U
ACGGAAAGUCCACACAUUA^  UAAGA     GA               A     UCUUAC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-9-P3a_5p
mirBase accessionMIMAT0001769
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Proposed targets TargetScanFish: dre-miR-9
Star sequence

Dre-Mir-9-P3a_3p*
mirBase accessionMIMAT0003156
Sequence 
39- AUAAAGCUAGAUAACCGAAAGUA -62
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