MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-9-P3

Family name MIR-9 (all species)
Seed CUUUGGU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-9a-3
Paralogues Mdo-Mir-9-P1  Mdo-Mir-9-P2  Mdo-Mir-9-P4 
Orthologues Ami-Mir-9-P3  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cli-Mir-9-P3  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dno-Mir-9-P3  Dre-Mir-9-P3a  Esc-Mir-9  Ete-Mir-9-P3  Gga-Mir-9-P3  Gja-Mir-9-P3  Gmo-Mir-9-P3a  Gmo-Mir-9-P3b  Hme-Mir-9-o3  Hsa-Mir-9-P3  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P3  Lgi-Mir-9  Loc-Mir-9-P3  Mal-Mir-9-P3a  Mal-Mir-9-P3b  Mml-Mir-9-P3  Mmu-Mir-9-P3  Mun-Mir-9-P3  Npo-Mir-9  Oan-Mir-9-P3-v1  Oan-Mir-9-P3-v2  Obi-Mir-9  Ocu-Mir-9-P3  Ovu-Mir-9  Pbv-Mir-9-P3  Pma-Mir-9-o3  Pmi-Mir-9  Rno-Mir-9-P3  Sha-Mir-9-P3  Spt-Mir-9-P3  Spu-Mir-9  Tgu-Mir-9-P3  Tni-Mir-9-P3a  Tni-Mir-9-P3b  Xbo-Mir-9  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xtr-Mir-9-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(monDom5_add)
2: 191328853-191328914 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGCAGCCGGGAGGCGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGUGUCGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUACACUGCGGAGCACGAG
Get precursor sequence
Structure
        10           20        30        40        50        60
GCUGCAGCCGGGAGGCG---|     GUUG   UC               G     GUGGUG 
                    GGGUUG    UUA  UUUGGUUAUCUAGCU UAUGA      U
                    CCCAAU    AAU  AAGCCAAUAGAUCGA AUACU      C
GAGCACGAGGCGUCACAUAC^     AAA-   GA               A     UCUGAG 
120       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-9-P3_5p

mirBase accessionMIMAT0004087
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Proposed targets TargetScanVert: mdo-miR-9a-5p
Star sequence

Mdo-Mir-9-P3_3p*

mirBase accessionMIMAT0004088
Sequence
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
Proposed targets TargetScanVert: mdo-miR-9a-3p