MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-9-o1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-9a-1
Paralogues Pma-Mir-9-o2  Pma-Mir-9-o3  Pma-Mir-9-o4  Pma-Mir-9-o5 
Orthologues Aca-Mir-9-P1  Agr-Mir-9  Ami-Mir-9-P1  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cja-Mir-9-P1  Cmi-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1a  Dre-Mir-9-P1b  Eba-Mir-9  Eca-Mir-9-P1  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Gmo-Mir-9-P1a  Gmo-Mir-9-P1b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P1  Isc-Mir-9  Laf-Mir-9-P1  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P1  Mal-Mir-9-P1a  Mal-Mir-9-P1b  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmr-Mir-9-P1  Mmu-Mir-9-P1  Mom-Mir-9  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P1  Pau-Mir-9  Pbv-Mir-9-P1  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P1  Rph-Mir-9  Sha-Mir-9-P1  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Tni-Mir-9-P1a  Tni-Mir-9-P1b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P1c  Xla-Mir-9-P1d  Xtr-Mir-9-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046108.1: 4385189-4385250 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUGUGACCGGGCCAAAGGGACGGCCCCUGUCUUUGGUUAUCUAGCUGUAUGAGUGUCAGAAUCCCGCCAUAAAGCUACUUAACCAAAAGCAGGGAUCCGUUCUGCGCGCAUCGCUCCACGG
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Structure
        10         20         30        40        50        60
GAUGUGACCGGGCCAAA-       C-|    UC        UC     G    AGUGUCA 
                  GGGACGG  CCCUG  UUUGGUUA  UAGCU UAUG       G
                  UCUUGCC  GGGAC  AAACCAAU  AUCGA AUAC       A
GGCACCUCGCUACGCGCG       UA^    GA        UC     A    CGCCCUA 
120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-9-o1_5p
mirBase accessionMIMAT0019373
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUG -22
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Star sequence

Pma-Mir-9-o1_3p* (predicted)
mirBase accessionNone
Sequence 
40- UAAAGCUACUUAACCAAAAGCA -62
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