MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-9-P1a

Family name MIR-9 (all species)
Seed CUUUGGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-9-P1b  Mal-Mir-9-P2b  Mal-Mir-9-P3a  Mal-Mir-9-P3b  Mal-Mir-9-P4a  Mal-Mir-9-P4b 
Orthologues Aca-Mir-9-P1  Ami-Mir-9-P1  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cmi-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1a  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Gmo-Mir-9-P1a  Hme-Mir-9-o1  Hsa-Mir-9-P1  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Loc-Mir-9-P1  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmu-Mir-9-P1  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ovu-Mir-9  Pbv-Mir-9-P1  Pma-Mir-9-o1  Pmi-Mir-9  Rno-Mir-9-P1  Sha-Mir-9-P1  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Tni-Mir-9-P1a  Xbo-Mir-9  Xtr-Mir-9-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884848.1: 885527-885587 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACGAGUGUGGUGGGGAAGUCUGUUUUUGUCUUUGGUUAUCUAGCUGUAUGAGUGUAAAUACGUGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUCCAUAACGUUGUGUCCAUUC
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Structure
        10           20        30        40        50          
AUACGAGUGUGGUGGGG---|    U       UC               G     GUGUAA 
                    AAGUC GUUUUUG  UUUGGUUAUCUAGCU UAUGA      \
                    UUCAG UAAAGAU  AAGCCAAUAGAUCGA AUACU      A
CUUACCUGUGUUGCAAUACC^    -       GA               A     GUGCAU 
 .       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-9-P1a_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Mal-Mir-9-P1a_3p*
mirBase accessionNone
Sequence 
38- AUAAAGCUAGAUAACCGAAAGUA -61
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