MirGeneDB ID | Bta-Mir-9-P1 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-9-1
|
Paralogues |
Bta-Mir-9-P2
Bta-Mir-9-P3
|
Orthologues |
Aca-Mir-9-P1
Ami-Mir-9-P1
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cfa-Mir-9-P1
Cin-Mir-9
Cmi-Mir-9-P1
Cpi-Mir-9-P1
Cpo-Mir-9-P1
Cte-Mir-9
Dno-Mir-9-P1
Dre-Mir-9-P1a
Dre-Mir-9-P1b
Esc-Mir-9
Ete-Mir-9-P1
Gga-Mir-9-P1
Gja-Mir-9-P1
Gmo-Mir-9-P1a
Gmo-Mir-9-P1b
Hme-Mir-9-o1
Hsa-Mir-9-P1
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P1
Lgi-Mir-9
Loc-Mir-9-P1
Mal-Mir-9-P1a
Mal-Mir-9-P1b
Mdo-Mir-9-P1
Mml-Mir-9-P1
Mmu-Mir-9-P1
Mun-Mir-9-P1
Npo-Mir-9
Oan-Mir-9-P1
Obi-Mir-9
Ocu-Mir-9-P1
Ovu-Mir-9
Pbv-Mir-9-P1
Pma-Mir-9-o1
Pmi-Mir-9
Rno-Mir-9-P1
Sha-Mir-9-P1
Spt-Mir-9-P1
Spu-Mir-9
Sto-Mir-9-P1
Tgu-Mir-9-P1
Tni-Mir-9-P1a
Tni-Mir-9-P1b
Xbo-Mir-9
Xla-Mir-9-P1c
Xla-Mir-9-P1d
Xtr-Mir-9-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037348.1: 20839142-20839203 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGGCGGUGGCGAAGGGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUCUCACAACUUCUGCGUGCGAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCGGCGGUGGCGAAGGG-- CC -| C G GUGCCA
AGG CGUUUCU CU UUUGGUUAUCUAGCU UAUGA C
UCU GUAAAGA GA AAGCCAAUAGAUCGA AUACU A
GAGCGUGCGUCUUCAACAC CA U^ - A GCCGAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Bta-Mir-9-P1_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Bta-Mir-9-P1_3p* |
mirBase accession | MIMAT0012549 |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-9-3p
|