Mir-9-P1

MirGeneDB ID

Rno-Mir-9-P1

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-9a-3

Paralogues

Rno-Mir-9-P2 Rno-Mir-9-P3

Orthologues

Aca-Mir-9-P1 Agr-Mir-9 Ami-Mir-9-P1 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P1 Cfa-Mir-9-P1 Cin-Mir-9 Cja-Mir-9-P1 Cmi-Mir-9-P1 Cpi-Mir-9-P1 Cpo-Mir-9-P1 Cte-Mir-9 Dgr-Mir-9 Dno-Mir-9-P1 Dre-Mir-9-P1a Dre-Mir-9-P1b Eba-Mir-9 Eca-Mir-9-P1 Egr-Mir-9 Esc-Mir-9 Ete-Mir-9-P1 Gga-Mir-9-P1 Gja-Mir-9-P1 Gmo-Mir-9-P1a Gmo-Mir-9-P1b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Hsa-Mir-9-P1 Isc-Mir-9 Laf-Mir-9-P1 Lan-Mir-9 Lch-Mir-9-P1 Lgi-Mir-9 Llo-Mir-9 Loc-Mir-9-P1 Mal-Mir-9-P1a Mal-Mir-9-P1b Mdo-Mir-9-P1 Mml-Mir-9-P1 Mmr-Mir-9-P1 Mmu-Mir-9-P1 Mom-Mir-9 Mun-Mir-9-P1 Npo-Mir-9 Oan-Mir-9-P1 Obi-Mir-9 Ocu-Mir-9-P1 Ofu-Mir-9 Ovu-Mir-9 Pab-Mir-9-P1 Pau-Mir-9 Pbv-Mir-9-P1 Pdu-Mir-9 Pma-Mir-9-o1 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P1 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P1 Spu-Mir-9 Sto-Mir-9-P1 Tgu-Mir-9-P1 Tni-Mir-9-P1a Tni-Mir-9-P1b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P1c Xla-Mir-9-P1d Xtr-Mir-9-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr1: 141229368-141229429 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGUGCCGGCGAAUGGGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUCUAACAACUUCUGCGUGCGAU

Get precursor sequence

Structure

        10          20         30        40        50        60
CGGUGCCGGCGAAUGGG--   CC       -| C               G     GUGCCA 
                   AGG  CGUUUCU CU UUUGGUUAUCUAGCU UAUGA      C
                   UCU  GUAAAGA GA AAGCCAAUAGAUCGA AUACU      A
UAGCGUGCGUCUUCAACAA   CA       U^ -               A     GCCGAG 
120       110       100        90         80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-9-P1_5p

mirBase accession

MIMAT0000781

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000781
TargetScanVert: rno-miR-9a-5p
miRDB: MIMAT0000781

Star sequence

Rno-Mir-9-P1_3p*

mirBase accession

MIMAT0004708

Sequence

39- AUAAAGCUAGAUAACCGAAAGUA -62

Get sequence

Proposed targets

microrna.org: MIMAT0004708
TargetScanVert: rno-miR-9a-3p
miRDB: MIMAT0004708