MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-9-o5

Family name MIR-9 (all species)
Seed CUUUGGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-9-o1  Pma-Mir-9-o2  Pma-Mir-9-o3  Pma-Mir-9-o4 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Ebu-Mir-9-P5  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046125.1: 5636174-5636237 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGGCGGAGAUGUGCAGAGGUUGUGUACUCUCUUUGGUUACCUAGCUGUAUGAGUGAUCGCCGAGCCUAUCAUAAAGCUAGAUAACCGAAAGUAGUAACAACGCUUAUACUCGCCACGUGGAAC
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Structure
        10           20         30        40        50        60 
CCGGCGGAGAUGUGCAGAG---|    G    -  C        C      G     GUGAUCG 
                      GUUGU UACU CU UUUGGUUA CUAGCU UAUGA       C
                      CAACA AUGA GA AAGCCAAU GAUCGA AUACU       C
CAAGGUGCACCGCUCAUAUUCG^    -    U  -        A      A     AUCCGAG 
  120       110       100          90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-9-o5_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUACCUAGCUGUAUGA -23
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Star sequence

Pma-Mir-9-o5_3p*
mirBase accessionNone
Sequence 
41- AUAAAGCUAGAUAACCGAAAGUA -64
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