Mir-9-P2

MirGeneDB ID

Xtr-Mir-9-P2

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-9a-2

Paralogues

Xtr-Mir-9-P1 Xtr-Mir-9-P3 Xtr-Mir-9-P4

Orthologues

Aca-Mir-9-P2 Agr-Mir-9 Ami-Mir-9-P2 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P2 Cfa-Mir-9-P2 Cin-Mir-9 Cja-Mir-9-P2 Cli-Mir-9-P2 Cmi-Mir-9-P2 Cpi-Mir-9-P2 Cpo-Mir-9-P2 Cte-Mir-9 Dgr-Mir-9 Dno-Mir-9-P2 Dre-Mir-9-P2a Dre-Mir-9-P2b Eba-Mir-9 Eca-Mir-9-P2 Egr-Mir-9 Esc-Mir-9 Ete-Mir-9-P2 Gga-Mir-9-P2 Gja-Mir-9-P2 Gmo-Mir-9-P2b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Hsa-Mir-9-P2 Isc-Mir-9 Laf-Mir-9-P2 Lan-Mir-9 Lch-Mir-9-P2 Lgi-Mir-9 Llo-Mir-9 Loc-Mir-9-P2 Mal-Mir-9-P2b Mdo-Mir-9-P2 Mml-Mir-9-P2 Mmr-Mir-9-P2 Mmu-Mir-9-P2 Mom-Mir-9 Mun-Mir-9-P2 Neu-Mir-9-P2 Npo-Mir-9 Oan-Mir-9-P2 Obi-Mir-9 Ocu-Mir-9-P2 Ofu-Mir-9 Ovu-Mir-9 Pab-Mir-9-P2 Pau-Mir-9 Pbv-Mir-9-P2 Pdu-Mir-9 Pma-Mir-9-o2 Pmi-Mir-9 Pve-Mir-9 Rno-Mir-9-P2 Rph-Mir-9 Sha-Mir-9-P2 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P2 Spu-Mir-9 Sto-Mir-9-P2 Tgu-Mir-9-P2 Tni-Mir-9-P2b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P2c Xla-Mir-9-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr1: 170225668-170225727 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAGGAUCCGUGUGUGGGAAGUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUAUUGGUUUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCCAGAUCAUCACAUGGCAGA

Get precursor sequence

Structure

        10          20        30        40        50         
UCAGGAUCCGUGUGUGG--|   UG   G   UC               G     GUGUA 
                   GAAG  GUU UUA  UUUGGUUAUCUAGCU UAUGA     U
                   CUUC  CAA AAU  AAGCCAAUAGAUCGA AUACU     U
AGACGGUACACUACUAGAC^   CU   A   GA               A     UUUGG 
.       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-9-P2_5p

mirBase accession

MIMAT0003553

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-9a-5p

Star sequence

Xtr-Mir-9-P2_3p*

mirBase accession

MIMAT0003554

Sequence

37- AUAAAGCUAGAUAACCGAAAGUA -60

Get sequence

Proposed targets

TargetScanVert: xtr-miR-9a-3p