MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-9-P4a

Family name MIR-9 (all species)
Seed CUUUGGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-9-5
Paralogues Gmo-Mir-9-P1a  Gmo-Mir-9-P1b  Gmo-Mir-9-P2b  Gmo-Mir-9-P3a  Gmo-Mir-9-P3b  Gmo-Mir-9-P4b 
Orthologues Aca-Mir-9-P4  Agr-Mir-9  Ami-Mir-9-P4  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dgr-Mir-9  Dre-Mir-9-P4a  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Llo-Mir-9  Mal-Mir-9-P4a  Mdo-Mir-9-P4  Mom-Mir-9  Mun-Mir-9-P4  Neu-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pbv-Mir-9-P4  Pdu-Mir-9  Pma-Mir-9-o4  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sha-Mir-9-P4  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4a  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1983: 244691-244750 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCCCUUUAAGAUACCUGGCUUAGUUUAUCUCUUUGGUUAUCUAGCUGUAUGAGUUUAUGAAAUAUCAUAAAGCUAGAGAACCGAACGUAUAAACUAAUUCUGCAGACUUCACGACGACG
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Structure
        10          20        30        40        50         
GCCCCUUUAAGAUACCU--|GC         CUC       A       G     GUUUA 
                   G  UUAGUUUAU   UUUGGUU UCUAGCU UAUGA     U
                   C  AAUCAAAUA   AAGCCAA AGAUCGA AUACU     G
GCAGCAGCACUUCAGACGU^UU         UGC       G       A     AUAAA 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm. CHECK THE P4S IN OTHER FISH
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-9-P4a_5p
mirBase accessionMIMAT0044076
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Gmo-Mir-9-P4a_3p*
mirBase accessionMIMAT0044161
Sequence 
37- AUAAAGCUAGAGAACCGAACGUA -60
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