MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-9-P4

Family name MIR-9 (all species)
Seed CUUUGGU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-9-3
Paralogues Cli-Mir-9-P2  Cli-Mir-9-P3 
Orthologues Aca-Mir-9-P4  Agr-Mir-9  Ami-Mir-9-P4  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dgr-Mir-9  Dre-Mir-9-P4a  Dre-Mir-9-P4b  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Llo-Mir-9  Mal-Mir-9-P4a  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Mom-Mir-9  Mun-Mir-9-P4  Neu-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pbv-Mir-9-P4  Pdu-Mir-9  Pma-Mir-9-o4  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sha-Mir-9-P4  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4a  Tni-Mir-9-P4b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P4c  Xla-Mir-9-P4d  Xtr-Mir-9-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(colLiv2)		 scaffold194: 244986-245045 [+]
Precursor
(pre-Mir +30nt flank)
CCAUUUUAUAAAGACCUGGGUUGGUUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUAUGUGAUAUCAUAAAGCUAGAGAACCGAAUGUAAAAACCCGCUCGCUGUUCUCCGGGAGAAAA
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Structure
        10          20        30        40        50         
CCAUUUUAUAAAGACCU--|   U       CUC       A       G     GUGUA 
                   GGGU GGUUUUU   UUUGGUU UCUAGCU UAUGA     U
                   CUCG CCAAAAA   AAGCCAA AGAUCGA AUACU     G
AAAAGAGGGCCUCUUGUCG^   C       UGU       G       A     AUAGU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-9-P4_5p
mirBase accessionMIMAT0038401
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Cli-Mir-9-P4_3p*
mirBase accessionMIMAT0038403
Sequence 
37- AUAAAGCUAGAGAACCGAAUGUA -60
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