MirGeneDB ID | Tni-Mir-9-P4b |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-9-P1a
Tni-Mir-9-P1b
Tni-Mir-9-P2b
Tni-Mir-9-P3a
Tni-Mir-9-P3b
Tni-Mir-9-P4a
|
Orthologues |
Aca-Mir-9-P4
Agr-Mir-9
Ami-Mir-9-P4
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cmi-Mir-9-P4
Cpi-Mir-9-P4
Cte-Mir-9
Dgr-Mir-9
Dre-Mir-9-P4b
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gmo-Mir-9-P4b
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Llo-Mir-9
Mal-Mir-9-P4b
Mdo-Mir-9-P4
Mom-Mir-9
Mun-Mir-9-P4
Neu-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pbv-Mir-9-P4
Pdu-Mir-9
Pma-Mir-9-o4
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sha-Mir-9-P4
Sma-Mir-9
Snu-Mir-9
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tgu-Mir-9-P4
War-Mir-9
Xbo-Mir-9
Xtr-Mir-9-P4
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
Un_random: 105862125-105862181 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCCUUUAAGAGACCACGGGUUAGUUUGUGUCUUUGGUUAUCUAGCUGUAUGAGUUUUAAUUUCAUAAAGCUAGAGAACCGAAAGUACGAACUGACGCCGAGCACUUCGGAGCGCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCCUUUAAGAGACCAC- -| UC A G GUUU
GG GUUAGUUUGUG UUUGGUU UCUAGCU UAUGA \
CC CAGUCAAGCAU AAGCCAA AGAUCGA AUACU U
GACGCGAGGCUUCACGAG G^ GA G A UUAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on the 3p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tni-Mir-9-P4b_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Tni-Mir-9-P4b_3p* |
mirBase accession | None |
Sequence |
34- AUAAAGCUAGAGAACCGAAAGUA -57
Get sequence
|