MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-7-P1b

Family name MIR-7 (all species)
Seed GGAAGAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-7b
Paralogues Gmo-Mir-7-P1a  Gmo-Mir-7-P2a  Gmo-Mir-7-P3  Gmo-Mir-7-P4a 
Orthologues Aae-Mir-7  Aca-Mir-7-P1  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P1  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P1  Cfa-Mir-7-P1  Cin-Mir-7  Cja-Mir-7-P1  Cli-Mir-7-P1  Cmi-Mir-7-P1  Cpi-Mir-7-P1  Cpo-Mir-7-P1  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P1  Dre-Mir-7-P1b  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P1  Esc-Mir-7  Ete-Mir-7-P1  Gga-Mir-7-P1  Gja-Mir-7-P1  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P1  Isc-Mir-7  Laf-Mir-7-P1  Lan-Mir-7  Lch-Mir-7-P1  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P1  Lpo-Mir-7  Mdo-Mir-7-P1  Mgi-Mir-7  Mml-Mir-7-P1  Mmr-Mir-7-P1  Mmu-Mir-7-P1  Mom-Mir-7  Neu-Mir-7-P1  Npo-Mir-7  Oan-Mir-7-P1  Obi-Mir-7  Ocu-Mir-7-P1  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P1  Pau-Mir-7  Pbv-Mir-7-P1  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o1  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P1  Rph-Mir-7  Sha-Mir-7-P1  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P1  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P1  Tca-Mir-7  Tgu-Mir-7-P1  War-Mir-7  Xbo-Mir-7  Xtr-Mir-7-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_3319: 52966-53029 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7-P1b)		 Mir-9-P1b GeneScaffold_3319: 19161-19222 [-] UCSC Ensembl
Mir-7-P1b GeneScaffold_3319: 52966-53029 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGUGGCCUCACAACACGUUUUGGAUGCUGUGGAAGACAAGUGAUUUUGUUGUUGUAACCAUGACAACCAGACAACAAGUCCCAGUCUCCCUCAUCAUUCAACACUCUCACUUCUGCUCUUCUG
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Structure
        10          20        30        40        50        60  
GCGUGGCCUCACAACAC--| U       C  U  A    AAGU     U     UGUAACCA 
                   GU UUGGAUG UG GG AGAC    GAUUU GUUGU        U
                   CA AACUUAC AC CC UCUG    CUGAA CAACA        G
GUCUUCUCGUCUUCACUCU^ C       U  U  C    ACC-     -     GACCAACA 
  120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-7-P1b_5p
mirBase accessionMIMAT0044219
Sequence 
0- UGGAAGACAAGUGAUUUUGUUGU -23
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Star sequence

Gmo-Mir-7-P1b_3p*
mirBase accessionNone
Sequence 
42- CAACAAGUCCCAGUCUCCCUCA -64
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