MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-7

Family name

MIR-7 (all species)

Seed

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aca-Mir-7-P2 Aca-Mir-7-P4 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P1 Ami-Mir-7-P2 Ami-Mir-7-P3 Ami-Mir-7-P4 Asu-Mir-7 Ava-Mir-7-P26 Ava-Mir-7-P27 Bfl-Mir-7 Bge-Mir-7 Bko-Mir-7-P18a Bko-Mir-7-P18b Bko-Mir-7-P19a Bko-Mir-7-P19b Bla-Mir-7 Bpl-Mir-7-P18 Bpl-Mir-7-P19 Bta-Mir-7-P1 Bta-Mir-7-P2 Bta-Mir-7-P4 Cfa-Mir-7-P1 Cfa-Mir-7-P2 Cfa-Mir-7-P4 Cin-Mir-7 Cja-Mir-7-P1 Cja-Mir-7-P2 Cja-Mir-7-P4 Cli-Mir-7-P1 Cli-Mir-7-P2 Cli-Mir-7-P3 Cli-Mir-7-P4 Cmi-Mir-7-P1 Cmi-Mir-7-P2 Cmi-Mir-7-P4 Cpi-Mir-7-P1 Cpi-Mir-7-P2 Cpi-Mir-7-P3 Cpi-Mir-7-P4 Cpo-Mir-7-P1 Cpo-Mir-7-P2 Cpo-Mir-7-P4 Csc-Mir-7-P14 Csc-Mir-7-P15 Cte-Mir-7 Dan-Mir-7 Dgr-Mir-7-P24 Dgr-Mir-7-P25 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dno-Mir-7-P2 Dno-Mir-7-P4 Dpu-Mir-7-P9 Dpu-Mir-7-P10 Dre-Mir-7-P1a Dre-Mir-7-P1b Dre-Mir-7-P2b Dre-Mir-7-P3 Dre-Mir-7-P4b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Ebu-Mir-7-P5 Ebu-Mir-7-P6 Ebu-Mir-7-P7 Ebu-Mir-7-P8 Eca-Mir-7-P1 Eca-Mir-7-P2 Eca-Mir-7-P4 Efe-Mir-7-P11 Efe-Mir-7-P12 Efe-Mir-7-P13 Egr-Mir-7-P16 Egr-Mir-7-P17 Esc-Mir-7 Ete-Mir-7-P1 Ete-Mir-7-P2 Ete-Mir-7-P4 Gga-Mir-7-P1 Gga-Mir-7-P2c Gga-Mir-7-P2d Gga-Mir-7-P4 Gja-Mir-7-P1 Gja-Mir-7-P2 Gja-Mir-7-P4 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Gmo-Mir-7-P2a Gmo-Mir-7-P3 Gmo-Mir-7-P4a Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P1 Hsa-Mir-7-P2 Hsa-Mir-7-P4 Isc-Mir-7 Laf-Mir-7-P1 Laf-Mir-7-P2 Laf-Mir-7-P4 Lan-Mir-7 Lch-Mir-7-P1 Lch-Mir-7-P2 Lch-Mir-7-P3 Lch-Mir-7-P4 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P1 Loc-Mir-7-P2 Loc-Mir-7-P3 Loc-Mir-7-P4 Loc-Mir-7-P4-as Lpo-Mir-7 Mal-Mir-7-P1a Mal-Mir-7-P2a Mal-Mir-7-P3 Mal-Mir-7-P4a Mdo-Mir-7-P1 Mdo-Mir-7-P2 Mdo-Mir-7-P4 Mgi-Mir-7 Mml-Mir-7-P1 Mml-Mir-7-P2 Mml-Mir-7-P4 Mmr-Mir-7-P1 Mmr-Mir-7-P2 Mmr-Mir-7-P4 Mmu-Mir-7-P1 Mmu-Mir-7-P2 Mmu-Mir-7-P4 Mom-Mir-7 Mun-Mir-7-P1e Mun-Mir-7-P1f Mun-Mir-7-P2 Mun-Mir-7-P3 Mun-Mir-7-P4 Neu-Mir-7-P1 Neu-Mir-7-P2 Neu-Mir-7-P4 Npo-Mir-7 Oan-Mir-7-P1 Oan-Mir-7-P2 Obi-Mir-7 Ocu-Mir-7-P1 Ocu-Mir-7-P2 Ocu-Mir-7-P4 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P1 Pab-Mir-7-P2 Pab-Mir-7-P4 Pau-Mir-7 Pbv-Mir-7-P1 Pbv-Mir-7-P2 Pbv-Mir-7-P4 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o1 Pma-Mir-7-o2 Pma-Mir-7-o3 Pma-Mir-7-o4 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P1 Rno-Mir-7-P2 Rno-Mir-7-P4 Sha-Mir-7-P1 Sha-Mir-7-P2 Sha-Mir-7-P4 Sko-Mir-7 Sma-Mir-7-P16 Sma-Mir-7-P17 Sme-Mir-7-P20 Sme-Mir-7-P21 Sme-Mir-7-P22 Sme-Mir-7-P23 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P1 Spt-Mir-7-P2 Spt-Mir-7-P3 Spt-Mir-7-P4 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P1 Sto-Mir-7-P2 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P1 Tgu-Mir-7-P2 Tgu-Mir-7-P4 Tni-Mir-7-P3 Tur-Mir-7-P28 Tur-Mir-7-P29 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xla-Mir-7-P2e Xla-Mir-7-P2f Xla-Mir-7-P3a Xla-Mir-7-P3b Xtr-Mir-7-P1 Xtr-Mir-7-P2 Xtr-Mir-7-P3

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Ruditapes_GCA_009026015)

CM018526.1: 31449765-31449825 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AGAUUAUAACCGUUGAGCCUGCAUGCGAGAUGGAAGACUUGUGAUUUUGUUGUUGUGUGUAAUGUUGAACAAUGAAAUACAGUCUUCCAUAUUGCAUGGAGUUAUUUACAGCUUUUACUAA

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Structure

        10          20        30        40        50        60 
AGAUUAUAACCGUUGAGC--| G       G          U   A   UG     GUGUGU 
                    CU CAUGCGA AUGGAAGACU GUG UUU  UUGUU      \
                    GA GUACGUU UACCUUCUGA CAU AAA  AACAA      A
AAUCAUUUUCGACAUUUAUU^ G       A          -   -   GU     GUUGUA 
 .       110       100        90         80         70

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

-

+

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Mature sequence

Rph-Mir-7_5p

mirBase accession

None

Sequence

0- UGGAAGACUUGUGAUUUUGUUGUU -24

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Star sequence

Rph-Mir-7_3p*

mirBase accession

None

Sequence

39- CAAUGAAAUACAGUCUUCCAUA -61

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