MirGeneDB ID | Egr-Mir-7-P16 |
Family name |
MIR-7 (all species) |
Seed |
GGAAGAC |
Species |
Hydatid worm (Echinococcus granulosus) |
MiRBase ID |
egr-mir-7
|
Paralogues |
Egr-Mir-7-P17
|
Orthologues |
Aae-Mir-7
Aga-Mir-7
Agr-Mir-7
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Cin-Mir-7
Cte-Mir-7
Dan-Mir-7
Dlo-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dsi-Mir-7
Dya-Mir-7
Eba-Mir-7
Esc-Mir-7
Gpa-Mir-7
Gsa-Mir-7
Gsp-Mir-7
Hme-Mir-7
Hmi-Mir-7
Hru-Mir-7
Isc-Mir-7
Lan-Mir-7
Lgi-Mir-7
Llo-Mir-7
Lpo-Mir-7
Mgi-Mir-7
Mom-Mir-7
Npo-Mir-7
Obi-Mir-7
Ofu-Mir-7
Ovu-Mir-7
Pau-Mir-7
Pca-Mir-7
Pcr-Mir-7
Pdu-Mir-7
Pfl-Mir-7
Pmi-Mir-7
Pve-Mir-7
Rph-Mir-7
Sko-Mir-7
Sma-Mir-7-P16
Sne-Mir-7
Snu-Mir-7
Spu-Mir-7
Sro-Mir-7
Tca-Mir-7
War-Mir-7
Xbo-Mir-7
|
Node of Origin (locus) |
Neodermata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000012.1: 579485-579546 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGUCCUGUAAUGAAAAGCCAUUGCUUUUGUGGAAGACUGGUGAUAUGUUGUAAAGCUCCCCUACCAUACAGCGUAUCGCAGUUUUUCCCUAAAAACAUUUGGCUAAUCUGCAAUUUGAAGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCGUCCUGUAAUGAAAA- U- C U -| G AAGCUC
GCCA UG UUUUG GG AAGACUG UGAUAUGUUGUA C
CGGU AC AAAAU CC UUUUGAC GCUAUGCGACAU C
GGAAGUUUAACGUCUAAU UU A C U^ - ACCAUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Egr-Mir-7-P16_5p |
mirBase accession | MIMAT0020233 |
Sequence |
0- UGGAAGACUGGUGAUAUGUUGUA -23
Get sequence
|
Star sequence |
Egr-Mir-7-P16_3p* |
mirBase accession | MIMAT0037421 |
Sequence |
39- CAGCGUAUCGCAGUUUUUCCCUA -62
Get sequence
|