MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-7-P16

Family name MIR-7 (all species)
Seed GGAAGAC
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues Sma-Mir-7-P17 
Orthologues Aae-Mir-7  Aga-Mir-7  Agr-Mir-7  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Cin-Mir-7  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Egr-Mir-7-P16  Esc-Mir-7  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Llo-Mir-7  Lpo-Mir-7  Mgi-Mir-7  Mom-Mir-7  Npo-Mir-7  Obi-Mir-7  Ofu-Mir-7  Ovu-Mir-7  Pau-Mir-7  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pmi-Mir-7  Pve-Mir-7  Rph-Mir-7  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spu-Mir-7  Sro-Mir-7  Tca-Mir-7  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) Neodermata
Node of Origin (family) Bilateria
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601626.3: 20082163-20082270 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAAAUCUUUGAUUACCAUUGCUUAAUCAUGGAAGACUGGUGAUAUGUUGUUCAAUGAUGAAAGUUUUAAAUAUUUUAUAAUUAAAAGUUUCAUCAAAAUAAUUAAAAUAAGAGCAACCUAUCUCAUUCUUCCAUGUAUGCGAUUGGUUAAACAACUGAGAUUAUCA
Get precursor sequence
Structure
        10             20        30        40        50        60        70        80   
CAAAAAUCUUUGAUUACC-----|    UUAAU         C   U    U      CAAUGAUGAAAGUUUUAAAUAUUUUAUAA 
                       AUUGC     CAUGGAAGA UGG GAUA GUUGUU                             U
                       UAGCG     GUACCUUCU ACU CUAU CAACGA                             U
ACUAUUAGAGUCAACAAAUUGGU^    UAU--         U   -    C      GAAUAAAAUUAAUAAAACUACUUUGAAAA 
      160       150       140         130        120       110       100        90
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Mature sequence

Sma-Mir-7-P16_5p
mirBase accessionNone
Sequence 
0- UGGAAGACUGGUGAUAUGUUGUU -23
Get sequence
Star sequence

Sma-Mir-7-P16_3p*
mirBase accessionNone
Sequence 
85- CAACCUAUCUCAUUCUUCCAUGU -108
Get sequence