MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-7-P17

Family name MIR-7 (all species)
Seed GGAAGAC
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-7
Paralogues Sma-Mir-7-P16 
Orthologues Aae-Mir-7  Aga-Mir-7  Agr-Mir-7  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Cin-Mir-7  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Egr-Mir-7-P17  Esc-Mir-7  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Llo-Mir-7  Lpo-Mir-7  Mgi-Mir-7  Mom-Mir-7  Npo-Mir-7  Obi-Mir-7  Ofu-Mir-7  Ovu-Mir-7  Pau-Mir-7  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pmi-Mir-7  Pve-Mir-7  Rph-Mir-7  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spu-Mir-7  Sro-Mir-7  Tca-Mir-7  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) Neodermata
Node of Origin (family) Bilateria
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601627.3: 25183038-25183119 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAGAUAUAAUUCUAUGUUCCAGAGAAACUUGGAAGACUUGUGAUUUAGUUGUUUAAUAUUAAGUGAUAUAAACUUGUUAAAUAUAAUGAACAACAAUCACAAAUCUCCAUGUGAAAUCUGGUUAAACAACUAACAGAAUUU
Get precursor sequence
Structure
        10         20         30        40        50        60        70  
AUAGAUAUAAUUCUAUGUU-     GAA-| U    A  C        UA      UAAUAUUAAGUGAUAUA 
                    CCAGA    AC UGGA GA UUGUGAUU  GUUGUU                 \
                    GGUCU    UG ACCU CU AACACUAA  CAACAA                 A
UUUAAGACAAUCAACAAAUU     AAAG^ U    -  A        --      GUAAUAUAAAUUGUUCA 
140       130       120       110        100          90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Mature sequence

Sma-Mir-7-P17_5p
mirBase accessionMIMAT0033598
Sequence 
0- UGGAAGACUUGUGAUUUAGUUGUU -24
Get sequence
Star sequence

Sma-Mir-7-P17_3p*
mirBase accessionMIMAT0033599
Sequence 
61- CAACAAUCACAAAUCUCCAUG -82
Get sequence