| MirGeneDB ID | Xtr-Mir-7-P3 |
|---|
| Family name |
MIR-7 (all species) |
|---|
| Seed |
GGAAGAC |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
|---|
| MiRBase ID |
xtr-mir-7-3
|
|---|
| Paralogues |
Xtr-Mir-7-P1
Xtr-Mir-7-P2
|
|---|
| Orthologues |
Aae-Mir-7
Aga-Mir-7
Agr-Mir-7
Ami-Mir-7-P3
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Cin-Mir-7
Cli-Mir-7-P3
Cpi-Mir-7-P3
Cte-Mir-7
Dan-Mir-7
Dlo-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dre-Mir-7-P3
Dsi-Mir-7
Dya-Mir-7
Eba-Mir-7
Esc-Mir-7
Gmo-Mir-7-P3
Gpa-Mir-7
Gsa-Mir-7
Gsp-Mir-7
Hme-Mir-7
Hmi-Mir-7
Hru-Mir-7
Isc-Mir-7
Lan-Mir-7
Lch-Mir-7-P3
Lgi-Mir-7
Llo-Mir-7
Loc-Mir-7-P3
Lpo-Mir-7
Mal-Mir-7-P3
Mgi-Mir-7
Mom-Mir-7
Mun-Mir-7-P3
Npo-Mir-7
Obi-Mir-7
Ofu-Mir-7
Ovu-Mir-7
Pau-Mir-7
Pca-Mir-7
Pcr-Mir-7
Pdu-Mir-7
Pfl-Mir-7
Pma-Mir-7-o3
Pmi-Mir-7
Pve-Mir-7
Rph-Mir-7
Sko-Mir-7
Sne-Mir-7
Snu-Mir-7
Spt-Mir-7-P3
Spu-Mir-7
Sro-Mir-7
Tca-Mir-7
Tni-Mir-7-P3
War-Mir-7
Xbo-Mir-7
Xla-Mir-7-P3a
Xla-Mir-7-P3b
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(xenTro9_add) |
chr8: 111833887-111833952 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGGCUCUUCACUUUAUUUCUGGGUCGGUUUGGAAGACUAGUGAUUUUGUUGUUUUUAUAAAAGUUUGUCACAAACAGCAAAUCGUAGUCUCCACUCUGCCCCAGGAGCCUGCCCUUCUGUAUCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGGCUCUUCACUUUAU--| U UU A G U UUUAUAAAA
UUCUGGG CGG UGGA GACUA UGAUUU GUUGUU \
AGGACCC GUC ACCU CUGAU GCUAAA CGACAA G
GUCUAUGUCUUCCCGUCCG^ C UC - - - ACACUGUUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xtr-Mir-7-P3_5p |
| mirBase accession | MIMAT0003552 |
|---|
| Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: xtr-miR-7
|
|---|
| Star sequence |
Xtr-Mir-7-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
44- ACAGCAAAUCGUAGUCUCCACU -66
Get sequence
|
|---|
