MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-7-P21

Family name MIR-7 (all species)
Seed GGAAGAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-7b
Paralogues Sme-Mir-7-P20  Sme-Mir-7-P22  Sme-Mir-7-P23 
Orthologues Aae-Mir-7  Aga-Mir-7  Agr-Mir-7  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Cin-Mir-7  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Esc-Mir-7  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Llo-Mir-7  Lpo-Mir-7  Mgi-Mir-7  Mom-Mir-7  Npo-Mir-7  Obi-Mir-7  Ofu-Mir-7  Ovu-Mir-7  Pau-Mir-7  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pmi-Mir-7  Pve-Mir-7  Rph-Mir-7  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spu-Mir-7  Sro-Mir-7  Tca-Mir-7  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000037_dd_Smes_g4_37: 3421445-3421511 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCUCUGGAAUAACACAGAAAAAUAAUCAUGGAAGACUGUCGAUUUCGUUGUCAGAGCAUUUUUAAAUGUAACAACGAUUUUGAUAAUCUUCCUGGAUUUUUUUGUUGAAACUUCUCUCAUUCGGG
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Structure
        10             20        30        40        50        60   
UAUCUCUGGAAUAACAC-----|       AA   U      C      UU       CAGAGCAUU 
                      AGAAAAAU  UCA GGAAGA UGUCGA  UCGUUGU         \
                      UUUUUUUA  GGU CCUUCU AUAGUU  AGCAACA         U
GGGCUUACUCUCUUCAAAGUUG^       --   -      A      UU       AUGUAAAUU 
     120       110       100           90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-7-P21_5p
mirBase accessionMIMAT0003970
Sequence 
0- UGGAAGACUGUCGAUUUCGUUGU -23
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Star sequence

Sme-Mir-7-P21_3p*
mirBase accessionMIMAT0012097
Sequence 
44- AACGAUUUUGAUAAUCUUCCUGG -67
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