| MirGeneDB ID | Sme-Mir-7-P20 |
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| Family name |
MIR-7 (all species) |
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| Seed |
GGAAGAC |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-7a
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| Paralogues |
Sme-Mir-7-P21
Sme-Mir-7-P22
Sme-Mir-7-P23
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| Orthologues |
Aae-Mir-7
Aga-Mir-7
Agr-Mir-7
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Cin-Mir-7
Cte-Mir-7
Dan-Mir-7
Dlo-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dsi-Mir-7
Dya-Mir-7
Eba-Mir-7
Esc-Mir-7
Gpa-Mir-7
Gsa-Mir-7
Gsp-Mir-7
Hme-Mir-7
Hmi-Mir-7
Hru-Mir-7
Isc-Mir-7
Lan-Mir-7
Lgi-Mir-7
Llo-Mir-7
Lpo-Mir-7
Mgi-Mir-7
Mom-Mir-7
Npo-Mir-7
Obi-Mir-7
Ofu-Mir-7
Ovu-Mir-7
Pau-Mir-7
Pca-Mir-7
Pcr-Mir-7
Pdu-Mir-7
Pfl-Mir-7
Pmi-Mir-7
Pve-Mir-7
Rph-Mir-7
Sko-Mir-7
Sne-Mir-7
Snu-Mir-7
Spu-Mir-7
Sro-Mir-7
Tca-Mir-7
War-Mir-7
Xbo-Mir-7
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| Node of Origin (locus) |
S. mediterranea
|
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| Node of Origin (family) |
Bilateria
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000009_dd_Smes_g4_9: 6662373-6662434 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAGUAGAAUAAUAGAAACGUGCCAUAAUUUGGAAGACUAUUGAUUUAGUUGAAUUGGUUAAUUUACUUUCAACUGAUUCUAGUCAUCCUUAUGUGGCAUGAAUAAUCCUCUUGGAAAAUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAAGUAGAAUAAUAGAAA---| AUUU A UU U AUUGGUU
CGUGCCAUA GGA GACUA GA UUAGUUGA A
GUACGGUGU CCU CUGAU CU AGUCAACU A
UUUAAAAGGUUCUCCUAAUAA^ AUU- A -- U UUCAUUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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| Mature sequence |
Sme-Mir-7-P20_5p |
| mirBase accession | MIMAT0003969 |
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| Sequence |
0- UGGAAGACUAUUGAUUUAGUUGA -23
Get sequence
|
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| Star sequence |
Sme-Mir-7-P20_3p* |
| mirBase accession | MIMAT0012096 |
|---|
| Sequence |
41- AACUGAUUCUAGUCAUCCUUA -62
Get sequence
|
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